RetrogeneDB ID: | retro_cpor_1463 | ||
Retrocopylocation | Organism: | Guinea Pig (Cavia porcellus) | |
Coordinates: | scaffold_89:390075..390524(-) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | YWHAQ | ||
Ensembl ID: | ENSCPOG00000011321 | ||
Aliases: | None | ||
Description: | None |
Percent Identity: | 56.05 % |
Parental protein coverage: | 64.83 % |
Number of stop codons detected: | 1 |
Number of frameshifts detected | 4 |
Parental | ICTTVLELLDKYLIANATNPESKVFYLKMKGDYFRYLAEVACGDDRKQT-IDNSQGAYQEAFDISKKEMQ |
IC.T..ELLD.YL..N.T..ESK.FYLK.K.DY...LA.VA.G.D.......NSQG..Q.......K.MQ | |
Retrocopy | ICITAMELLDNYLMDNVTTSESKFFYLKRKRDYLQDLADVAYG-DNRKK<VNNSQGTLQRSIKYARKGMQ |
Parental | PTHPIRLGLALNFSVFYYEILN-NPELA-CTLAKTAFDEAIAELDTL-NEDSYKDSTLIMQLLRDNLTLW |
PTH...LGL.L.F...YYEILN.NP.LA.CTL.K......I.EL..L..E.SYK.ST.IMQLLRDNL.L. | |
Retrocopy | PTHQSCLGLSLAFCI-YYEILN>NPKLA>CTLTKNG--RTISELHIL>KEHSYKNSTRIMQLLRDNLILG |
Parental | TSDSAGEECDAAEGAEN |
..DSAGE..DAAEG..N | |
Retrocopy | N*DSAGERHDAAEGLRN |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP017611_brain | 0 .00 RPM | 74 .89 RPM |
SRP017611_kidney | 0 .00 RPM | 103 .95 RPM |
SRP017611_liver | 0 .00 RPM | 22 .20 RPM |
SRP040447_lung | 0 .00 RPM | 108 .75 RPM |
SRP040447_skeletal_muscle | 0 .00 RPM | 18 .98 RPM |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Ailuropoda melanoleuca | ENSAMEG00000008618 | 4 retrocopies | |
Cavia porcellus | ENSCPOG00000008007 | 1 retrocopy | |
Cavia porcellus | ENSCPOG00000011321 | 4 retrocopies | |
Cavia porcellus | ENSCPOG00000020285 | 5 retrocopies | |
Echinops telfairi | ENSETEG00000015359 | 4 retrocopies | |
Myotis lucifugus | ENSMLUG00000005383 | 1 retrocopy | |
Monodelphis domestica | ENSMODG00000014740 | 1 retrocopy | |
Nomascus leucogenys | ENSNLEG00000013534 | 3 retrocopies | |
Oryctolagus cuniculus | ENSOCUG00000010482 | 1 retrocopy | |
Rattus norvegicus | ENSRNOG00000008104 | 5 retrocopies | |
Sorex araneus | ENSSARG00000012476 | 4 retrocopies |