RetrogeneDB ID: | retro_btau_1094 | ||
Retrocopylocation | Organism: | Cow (Bos taurus) | |
Coordinates: | 26:11110370..11110748(+) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | ENSBTAG00000007883 | |
Aliases: | None | ||
Status: | KNOWN_PSEUDOGENE | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | EIF4E | ||
Ensembl ID: | ENSBTAG00000009522 | ||
Aliases: | None | ||
Description: | Eukaryotic translation initiation factor 4E [Source:UniProtKB/Swiss-Prot;Acc:Q9N0T5] |
Percent Identity: | 91.34 % |
Parental protein coverage: | 58.53 % |
Number of stop codons detected: | 0 |
Number of frameshifts detected | 0 |
Parental | KHPLQNRWALWFFKNDKSKTWQANLRLISKFDTVEDFWALYNHIQLSSNLMPGCDYSLFKDGIEPMWEDE |
KHPLQNRWALWFFKNDK.KTWQANLRL.SKFDT.EDFWALYNHIQLSSNLM.GCDYSLFKDGIEPMWEDE | |
Retrocopy | KHPLQNRWALWFFKNDKGKTWQANLRLTSKFDTIEDFWALYNHIQLSSNLMTGCDYSLFKDGIEPMWEDE |
Parental | KNKRGGRWLITLNKQQRRSDLDRFWLETVLCLIGESFDDYSDDVCGAVVNVRAKGDK |
KNKRG..WLITLNKQQRRSDLD.FWLET.LCLIGESFDDYSDDVCG.VVN.RA.GDK | |
Retrocopy | KNKRG-QWLITLNKQQRRSDLDVFWLETLLCLIGESFDDYSDDVCGVVVNIRANGDK |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
ERP005899_liver | 2 .45 RPM | 41 .38 RPM |
ERP005899_muscle | 5 .54 RPM | 40 .59 RPM |
SRP017611_brain | 0 .82 RPM | 33 .44 RPM |
SRP017611_kidney | 0 .41 RPM | 48 .31 RPM |
SRP017611_liver | 0 .45 RPM | 21 .07 RPM |
SRP030211_testis | 0 .30 RPM | 96 .42 RPM |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Bos taurus | ENSBTAG00000003103 | 1 retrocopy | |
Bos taurus | ENSBTAG00000009522 | 3 retrocopies |
retro_btau_1094 , retro_btau_1702, retro_btau_944,
|
Bos taurus | ENSBTAG00000010598 | 2 retrocopies | |
Canis familiaris | ENSCAFG00000010307 | 1 retrocopy | |
Choloepus hoffmanni | ENSCHOG00000009450 | 9 retrocopies | |
Dasypus novemcinctus | ENSDNOG00000013712 | 5 retrocopies | |
Echinops telfairi | ENSETEG00000007347 | 3 retrocopies | |
Macropus eugenii | ENSMEUG00000011104 | 3 retrocopies | |
Myotis lucifugus | ENSMLUG00000005035 | 3 retrocopies | |
Monodelphis domestica | ENSMODG00000020716 | 1 retrocopy | |
Mustela putorius furo | ENSMPUG00000002041 | 1 retrocopy | |
Otolemur garnettii | ENSOGAG00000001131 | 1 retrocopy | |
Tursiops truncatus | ENSTTRG00000004206 | 2 retrocopies | |
Vicugna pacos | ENSVPAG00000006072 | 3 retrocopies | |
Drosophila melanogaster | FBgn0035709 | 1 retrocopy |