Parental gene:

EIF4E, ENSBTAG00000009522

Aliases:None
Description:Eukaryotic translation initiation factor 4E [Source:UniProtKB/Swiss-Prot;Acc:Q9N0T5]
Organism:Cow (Bos taurus)
Coordinates:6:27042236..27080766(+)


>ENSBTAG00000009522
ATGGCGACTGTGGAACCGGAAACCACCCCTACTCCGAATCCCCCGCCTACAGAAGAAGAGAAAACAGAATCTAATCAGGA
GGTTGCTAACCCAGAACACTATATTAAACACCCTTTACAGAACAGATGGGCACTCTGGTTTTTTAAAAATGATAAAAGCA
AAACTTGGCAAGCAAACCTTCGATTGATCTCTAAGTTTGATACTGTTGAAGACTTTTGGGCTCTGTACAACCATATCCAG
TTGTCTAGTAATTTAATGCCTGGCTGTGACTACTCACTTTTTAAGGATGGTATTGAGCCTATGTGGGAAGATGAGAAAAA
CAAACGAGGAGGACGATGGCTAATTACACTGAACAAACAGCAGAGACGAAGTGACCTCGATCGTTTTTGGCTAGAGACAG
TGCTGTGCCTTATTGGAGAATCTTTTGATGACTACAGTGATGATGTATGTGGAGCTGTTGTTAATGTTAGAGCTAAAGGT
GATAAAATAGCAATATGGACTACTGAATGTGAAAACAGAGAAGCTGTTACACATATAGGGAGGGTATACAAGGAAAGGTT
AGGACTTCCTCCAAAGATAGTGATTGGTTATCAGTCCCATGCAGACACAGCTACTAAGAGCGGCTCCACCACTAAAAATA
GGTTTGTTGTTTAA

Library Parental gene expression (RPM)
ERP005899_liver 41 .38 RPM
ERP005899_muscle 40 .59 RPM
SRP017611_brain 33 .44 RPM
SRP017611_kidney 48 .31 RPM
SRP017611_liver 21 .07 RPM
SRP030211_testis 96 .42 RPM



Species Parental gene accession Homology type Retrogenes number
Bos taurus ENSBTAG00000003103 within_species_paralog 1 retrogene
retro_btau_1679,
Bos taurus ENSBTAG00000010598 within_species_paralog 2 retrogenes
retro_btau_1232, retro_btau_1498,
Canis familiaris ENSCAFG00000010307 ortholog_one2one 1 retrogene
retro_cfam_1276,
Choloepus hoffmanni ENSCHOG00000009450 ortholog_one2one 9 retrogenes
retro_chof_1177, retro_chof_1219, retro_chof_124, retro_chof_1319, retro_chof_1551, retro_chof_200, retro_chof_604, retro_chof_918, retro_chof_992,
Dasypus novemcinctus ENSDNOG00000013712 ortholog_one2one 5 retrogenes
retro_dnov_1722, retro_dnov_2378, retro_dnov_2570, retro_dnov_353, retro_dnov_638,
Echinops telfairi ENSETEG00000007347 ortholog_one2one 3 retrogenes
retro_etel_1285, retro_etel_1449, retro_etel_499,
Macropus eugenii ENSMEUG00000011104 ortholog_one2one 3 retrogenes
retro_meug_2087, retro_meug_2114, retro_meug_428,
Myotis lucifugus ENSMLUG00000005035 ortholog_one2many 3 retrogenes
retro_mluc_1519, retro_mluc_24, retro_mluc_474,
Monodelphis domestica ENSMODG00000020716 ortholog_one2one 1 retrogene
retro_mdom_701,
Mustela putorius furo ENSMPUG00000002041 ortholog_one2many 1 retrogene
retro_mputfur_37,
Otolemur garnettii ENSOGAG00000001131 possible_ortholog 1 retrogene
retro_ogar_259,
Tursiops truncatus ENSTTRG00000004206 ortholog_one2one 2 retrogenes
retro_ttru_1591, retro_ttru_592,
Vicugna pacos ENSVPAG00000006072 ortholog_one2one 3 retrogenes
retro_vpac_238, retro_vpac_444, retro_vpac_93,
Drosophila melanogaster FBgn0035709 ortholog_many2many 1 retrogene
retro_dmel_68,

# RetrogeneDB ID Identity (%) Coverage (%) ORF conservation Expression evidence RDV
1. retro_btau_944 84.91 97.24
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2. retro_btau_1094 91.34 58.53
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3. retro_btau_1702 75.00 58.06
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Download FASTA sequences of all ENSBTAG00000009522 retrocopies