RetrogeneDB ID: | retro_btau_1498 | ||
Retrocopylocation | Organism: | Cow (Bos taurus) | |
Coordinates: | 6:72705784..72706450(-) | ||
Located in intron of: | ENSBTAG00000001772 | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | EIF4E2 | ||
Ensembl ID: | ENSBTAG00000010598 | ||
Aliases: | None | ||
Description: | eukaryotic translation initiation factor 4E type 2 isoform 1 [Source:RefSeq peptide;Acc:NP_001069263] |
Percent Identity: | 100. % |
Parental protein coverage: | 94.07 % |
Number of stop codons detected: | 0 |
Number of frameshifts detected | 0 |
Parental | MNNKFDALKDDDSGDHDQNEENSTQKDGEKEKTERDKSQSSSKRKAVVPGPAEHPLQYNYTFWYSRRTPG |
MNNKFDALKDDDSGDHDQNEENSTQKDGEKEKTERDKSQSSSKRKAVVPGPAEHPLQYNYTFWYSRRTPG | |
Retrocopy | MNNKFDALKDDDSGDHDQNEENSTQKDGEKEKTERDKSQSSSKRKAVVPGPAEHPLQYNYTFWYSRRTPG |
Parental | RPTSSQSYEQNIKQIGTFASVEQFWRFYSHMVRPGDLTGHSDFHLFKEGIKPMWEDDANKNGGKWIIRLR |
RPTSSQSYEQNIKQIGTFASVEQFWRFYSHMVRPGDLTGHSDFHLFKEGIKPMWEDDANKNGGKWIIRLR | |
Retrocopy | RPTSSQSYEQNIKQIGTFASVEQFWRFYSHMVRPGDLTGHSDFHLFKEGIKPMWEDDANKNGGKWIIRLR |
Parental | KGLASRCWENLILAMLGEQFMVGEEICGAVVSVRFQEDIISIWNKTASDQATTARIRDTLRRVLNLPPNT |
KGLASRCWENLILAMLGEQFMVGEEICGAVVSVRFQEDIISIWNKTASDQATTARIRDTLRRVLNLPPNT | |
Retrocopy | KGLASRCWENLILAMLGEQFMVGEEICGAVVSVRFQEDIISIWNKTASDQATTARIRDTLRRVLNLPPNT |
Parental | IMEYKTHTDSIK |
IMEYKTHTDSIK | |
Retrocopy | IMEYKTHTDSIK |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
ERP005899_liver | 0 .07 RPM | 2 .23 RPM |
ERP005899_muscle | 1 .90 RPM | 10 .08 RPM |
SRP017611_brain | 0 .87 RPM | 6 .53 RPM |
SRP017611_kidney | 2 .02 RPM | 9 .25 RPM |
SRP017611_liver | 0 .91 RPM | 2 .64 RPM |
SRP030211_testis | 1 .38 RPM | 17 .01 RPM |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Ailuropoda melanoleuca | ENSAMEG00000016456 | 1 retrocopy | |
Bos taurus | ENSBTAG00000003103 | 1 retrocopy | |
Bos taurus | ENSBTAG00000009522 | 3 retrocopies | |
Bos taurus | ENSBTAG00000010598 | 2 retrocopies |
retro_btau_1232, retro_btau_1498 ,
|
Canis familiaris | ENSCAFG00000011328 | 1 retrocopy | |
Callithrix jacchus | ENSCJAG00000013786 | 2 retrocopies | |
Microcebus murinus | ENSMICG00000015082 | 2 retrocopies | |
Myotis lucifugus | ENSMLUG00000011269 | 1 retrocopy | |
Mustela putorius furo | ENSMPUG00000005206 | 2 retrocopies | |
Otolemur garnettii | ENSOGAG00000009155 | 1 retrocopy | |
Sarcophilus harrisii | ENSSHAG00000013108 | 1 retrocopy |