RetrogeneDB ID: | retro_btau_1150 | ||
Retrocopylocation | Organism: | Cow (Bos taurus) | |
Coordinates: | 28:13411063..13411641(-) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | ENSBTAG00000003739 | |
Aliases: | None | ||
Status: | KNOWN_PSEUDOGENE | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | BT.106487 | ||
Ensembl ID: | ENSBTAG00000040497 | ||
Aliases: | LIN28A, LIN28 | ||
Description: | protein lin-28 homolog A [Source:RefSeq peptide;Acc:NP_001179986] |
Percent Identity: | 80.93 % |
Parental protein coverage: | 94.15 % |
Number of stop codons detected: | 1 |
Number of frameshifts detected | 1 |
Parental | CAKAPEEAPEDAARAAEEPQLLHGAGICKWFNVRMGFGFLSMTARAGVALDPPVDVFVHQSKLHMEGFRS |
C......A.EDA............AGICKWFN..MGFGFLSMTAR.GVALDPPVDVFVHQSKL.MEGF.S | |
Retrocopy | CRWLHQSAGEDAGGRGQRS*GAAAAGICKWFNEHMGFGFLSMTARTGVALDPPVDVFVHQSKLYMEGFWS |
Parental | LKEGEAVEFTFKKSAKGLESIRVTGPGGVFCIGSERRPKGKNMQKRRS-KGDRCYNCGGLDHHAKECKLP |
LK.GEAVEFTFKKS.KGLESIRVTGPGGVFCI.SERRPKGKNMQK..S.KGDR.YNC.GLDHHAKECKLP | |
Retrocopy | LKWGEAVEFTFKKSTKGLESIRVTGPGGVFCIESERRPKGKNMQKHTS<KGDRRYNCAGLDHHAKECKLP |
Parental | PQPKKCHFCQSINHMVASCPLKAQQAPSSQGKPAYFREEEEEIHSSAMLPEAQN |
PQPKKCHFCQSI.H.VASCPLKAQQAPSSQGKPAYF.EEEEEIHSS.MLP.AQN | |
Retrocopy | PQPKKCHFCQSISHVVASCPLKAQQAPSSQGKPAYFPEEEEEIHSSVMLPKAQN |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
ERP005899_liver | 0 .00 RPM | 0 .00 RPM |
ERP005899_muscle | 0 .00 RPM | 0 .00 RPM |
SRP017611_brain | 0 .00 RPM | 0 .00 RPM |
SRP017611_kidney | 0 .00 RPM | 0 .00 RPM |
SRP017611_liver | 0 .00 RPM | 0 .00 RPM |
SRP030211_testis | 0 .03 RPM | 0 .04 RPM |