Parental gene:

LIN28A, ENSPTRG00000000384

Aliases:None
Description:lin-28 homolog A (C. elegans) [Source:HGNC Symbol;Acc:15986]
Organism:Chimpanzee (Pan troglodytes)
Coordinates:1:26422202..26438261(+)


>ENSPTRG00000000384
ATGGGCTCCGTGTCCAACCAGCAGTTTGCAGGTGGCTGCGCCAAGGCGGCAGAAGAGGCGCCCGAGGAGGCGCCGGAGGA
CGCGGCCCGGGCGGCGGACGAGCCTCAGCTGCTGCACGGTGCGGGCATCTGTAAGTGGTTCAACGTGCGCATGGGGTTCG
GCTTCCTGTGCATGACCGCCCGCGCCGGGGTCGCGCTCGACCCCCCAGTGGATGTCTTTGTACACCAGAGTAAGCTGCAC
ATGGAAGGGTTCCGCAGCTTGAAGGAGGGTGAGGCAGTGGAGTTCACCTTTAAGAAGTCAGCCAAGGGTCTGGAATCCAT
CCGTGTCACCGGACCTGGTGGAGTATTCTGTATTGGGAGTGAGAGGCGGCCAAAAGGAAAGAACATGCAGAAGCGCAGAT
CAAAAGGAGACAGGTGCTACAACTGTGGAGGTCTAGATCATCATGCCAAGGAATGCAAGCTGCCACCCCAGCCCAAGAAG
TGCCACTTCTGCCAGAGCATCAGCCATATGGTAGCCTCATGTCCGCTGAAGGCCCAGCAGGGCCCTAGTGCACAGGGAAA
GCCAACCTACTTTCGAGAGGAAGAAGAAGAAATCCATAGCCCTACCCTGCTCCCGGAGGCACAGAATTGA

Library Parental gene expression (RPM)
SRP007412_brain_prefrontal_cortex 0 .00 RPM
SRP007412_cerebellum 0 .04 RPM
SRP007412_heart 0 .00 RPM
SRP007412_kidney 0 .00 RPM
SRP007412_liver 0 .00 RPM
SRP007412_testis 1 .37 RPM



Species Parental gene accession Homology type Retrogenes number
Ailuropoda melanoleuca ENSAMEG00000010582 ortholog_one2many 2 retrogenes
retro_amel_396, retro_amel_649,
Bos taurus ENSBTAG00000040497 ortholog_one2many 3 retrogenes
retro_btau_1150, retro_btau_1594, retro_btau_199,
Canis familiaris ENSCAFG00000012488 ortholog_one2one 2 retrogenes
retro_cfam_2049, retro_cfam_767,
Callithrix jacchus ENSCJAG00000009796 ortholog_one2many 5 retrogenes
retro_cjac_1468, retro_cjac_1784, retro_cjac_186, retro_cjac_2597, retro_cjac_33,
Cavia porcellus ENSCPOG00000019646 ortholog_one2many 1 retrogene
retro_cpor_120,
Dasypus novemcinctus ENSDNOG00000010710 ortholog_one2one 5 retrogenes
retro_dnov_102, retro_dnov_1112, retro_dnov_2300, retro_dnov_690, retro_dnov_853,
Equus caballus ENSECAG00000020267 ortholog_one2one 1 retrogene
retro_ecab_258,
Homo sapiens ENSG00000131914 ortholog_one2one 2 retrogenes
retro_hsap_2187, retro_hsap_2450,
Gorilla gorilla ENSGGOG00000024918 ortholog_one2one 2 retrogenes
retro_ggor_1526, retro_ggor_1732,
Myotis lucifugus ENSMLUG00000010158 ortholog_one2many 1 retrogene
retro_mluc_1023,
Nomascus leucogenys ENSNLEG00000009294 ortholog_one2one 4 retrogenes
retro_nleu_204, retro_nleu_2300, retro_nleu_2896, retro_nleu_316,
Oryctolagus cuniculus ENSOCUG00000000299 ortholog_one2many 1 retrogene
retro_ocun_19,
Otolemur garnettii ENSOGAG00000003971 ortholog_one2one 1 retrogene
retro_ogar_481,
Pongo abelii ENSPPYG00000001684 ortholog_one2one 3 retrogenes
retro_pabe_1801, retro_pabe_2067, retro_pabe_2849,
Pteropus vampyrus ENSPVAG00000017267 ortholog_one2one 1 retrogene
retro_pvam_110,
Rattus norvegicus ENSRNOG00000038409 ortholog_one2one 2 retrogenes
retro_rnor_2076, retro_rnor_2077,
Sus scrofa ENSSSCG00000003557 ortholog_one2one 1 retrogene
retro_sscr_358,
Ictidomys tridecemlineatus ENSSTOG00000004329 ortholog_one2one 1 retrogene
retro_itri_1647,
Tursiops truncatus ENSTTRG00000005678 ortholog_one2one 4 retrogenes
retro_ttru_1312, retro_ttru_1559, retro_ttru_481, retro_ttru_548,

# RetrogeneDB ID Identity (%) Coverage (%) ORF conservation Expression evidence RDV
1. retro_ptro_1415 79.90 97.13
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2. retro_ptro_1665 90.00 100.00
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Download FASTA sequences of all ENSPTRG00000000384 retrocopies