RetrogeneDB ID: | retro_cjac_2597 | ||
Retrocopylocation | Organism: | Marmoset (Callithrix jacchus) | |
Coordinates: | 5:17141327..17141903(-) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | None | ||
Ensembl ID: | ENSCJAG00000009796 | ||
Aliases: | None | ||
Description: | None |
Percent Identity: | 72.46 % |
Parental protein coverage: | 97.13 % |
Number of stop codons detected: | 1 |
Number of frameshifts detected | 4 |
Parental | MGSVSNQQFAGGCAKAAEEAPEEAPEDAARAADEPQLLHG-AGICKWFNVRMGFGFLSMTARAGVALDPP |
.GSVSNQQ.AGGCAKAA....EEA.E..A...D.P.LLH...GIC.WFN...GF.FLSMT..AGVALDPP | |
Retrocopy | LGSVSNQQLAGGCAKAA----EEALE--APSGDKP*LLHV<TGICTWFNMLLGFVFLSMTTLAGVALDPP |
Parental | VDVFVHQSKLHMEGFR-SLKEGEAVEFTFKKSAKGLESIRVTGPGG-VFCIGSERRPKGKNMQKRRSKGD |
VD.FVHQ.K.HMEGF..SLK.GEA.E.....SA.G.ESIRVT..GG..FCIGSERRPKGKNMQK.R.KGD | |
Retrocopy | VDIFVHQRKVHMEGFL>SLKGGEAAE----ESAEGEESIRVTRSGG<LFCIGSERRPKGKNMQKPRPKGD |
Parental | RCYNCGGLDHHAKECKLPPQPKKCHFCQSISHMVASCPLKAQQAPSA-QGKPTYFREEEEEIHSPTL |
R..NCGGLDHHAKECKL.PQP..C.FCQSISHMVASCPLKAQQ.PSA.QGKP.Y...EEEEIHSP.L | |
Retrocopy | RYCNCGGLDHHAKECKLAPQPWRCRFCQSISHMVASCPLKAQQVPSA>QGKPIY-SPEEEEIHSPAL |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP051959_colon | 0 .00 RPM | 0 .00 RPM |
SRP051959_heart | 0 .00 RPM | 0 .00 RPM |
SRP051959_kidney | 0 .04 RPM | 0 .00 RPM |
SRP051959_liver | 0 .06 RPM | 0 .00 RPM |
SRP051959_lung | 0 .18 RPM | 0 .00 RPM |
SRP051959_lymph_node | 0 .00 RPM | 0 .00 RPM |
SRP051959_skeletal_muscle | 0 .00 RPM | 0 .00 RPM |
SRP051959_spleen | 0 .00 RPM | 0 .02 RPM |