RetrogeneDB ID: | retro_cfam_1798 | ||
Retrocopylocation | Organism: | Dog (Canis familiaris) | |
Coordinates: | 6:54391558..54392027(+) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | RPS7 | ||
Ensembl ID: | ENSCAFG00000003263 | ||
Aliases: | None | ||
Description: | ribosomal protein S7 [Source:HGNC Symbol;Acc:10440] |
Percent Identity: | 72.15 % |
Parental protein coverage: | 87.22 % |
Number of stop codons detected: | 2 |
Number of frameshifts detected | 1 |
Parental | SQLRELNITAAKEIEVGGGRKAIIIFVPVPQLKSFQKIQVRLVRELEKKFSGKHVVFIAQRRILPKPT-R |
..LRELN.TAAKEIEVG.G.K..I.FVP.P.LKSF.KIQ..L..ELEKKFSGK.VVFIAQR..LP.PT.. | |
Retrocopy | AHLRELNATAAKEIEVGSGWKVLITFVPIPELKSF*KIQIQLACELEKKFSGKLVVFIAQRT-LP*PT>E |
Parental | KSRTKNKQKRPRSRTLTAVHDAILEDLVFPSEIVGKRIRVKLDGSRLIKVHLDKAQQNNVEHKVETFSGV |
KS.TKN..KRPR..TLTAVHD..LE.LVFPS.IV.K.I.V.LDG..L.KVHL.KAQQ.N.EHKVETFSG. | |
Retrocopy | KSHTKNEHKRPRIHTLTAVHDTVLEVLVFPSKIVRKKIHVMLDGIQLTKVHLNKAQQSNMEHKVETFSGI |
Parental | YKKLTGKDVNFEFPEFQL |
.KKLT.KDV.FEFPEFQL | |
Retrocopy | CKKLTSKDVDFEFPEFQL |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP012049_cerebellum | 0 .08 RPM | 387 .10 RPM |
SRP017611_brain | 0 .16 RPM | 95 .83 RPM |
SRP017611_kidney | 0 .07 RPM | 1173 .55 RPM |
SRP017611_liver | 0 .07 RPM | 367 .28 RPM |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Bos taurus | ENSBTAG00000016224 | 5 retrocopies | |
Canis familiaris | ENSCAFG00000003263 | 1 retrocopy |
retro_cfam_1798 ,
|
Callithrix jacchus | ENSCJAG00000016462 | 2 retrocopies | |
Cavia porcellus | ENSCPOG00000009795 | 2 retrocopies | |
Felis catus | ENSFCAG00000023243 | 2 retrocopies | |
Gorilla gorilla | ENSGGOG00000023095 | 13 retrocopies | |
Loxodonta africana | ENSLAFG00000015087 | 11 retrocopies | |
Myotis lucifugus | ENSMLUG00000006121 | 1 retrocopy | |
Mus musculus | ENSMUSG00000061477 | 2 retrocopies | |
Oryctolagus cuniculus | ENSOCUG00000008507 | 2 retrocopies | |
Otolemur garnettii | ENSOGAG00000028165 | 1 retrocopy | |
Pongo abelii | ENSPPYG00000025872 | 12 retrocopies | |
Pan troglodytes | ENSPTRG00000011615 | 3 retrocopies | |
Pteropus vampyrus | ENSPVAG00000002071 | 7 retrocopies | |
Rattus norvegicus | ENSRNOG00000008551 | 2 retrocopies |