Parental gene:

ENSCJAG00000016462

Aliases:None
Description:None
Organism:Marmoset (Callithrix jacchus)
Coordinates:14:105198800..105204789(-)


>ENSCJAG00000016462
ATGTTCAGTTCGAGCGCCAAGATCGTGAAGCCCAATGGCGAGAAGCCAGACGAGTTCGAGTCCGGCATCTCCCAGGCTCT
TCTGGAGCTGGAGATGAACTCGGACCTCAAGGCTCAGCTCAGGGAGCTGAATATTACGGCAGCCAAGGAAATTGAAGTTG
GTGGTGGCCGGAAAGCTATCATAATCTTTGTTCCTGTTCCTCAACTAAAATCTTTCCAGAAAATCCAAGTCCGGCTGGTA
CGCGAATTGGAGAAAAAGTTCAGTGGGAAGCATGTTGTCTTTATTGCCCAGAGGAGAATTCTGCCTAAACCAACTCGAAA
AAGCCGTACAAAAAATAAACAAAAGCGTCCCAGGAGCCGTACACTGACAGCTGTGCACGATGCAATCCTTGAGGACCTGG
TCTTCCCAAGTGAAATTGTGGGCAAGAGAATCCGCGTGAAACTGGATGGCAGCCGGCTCATAAAGGTTCATTTGGACAAA
GCACAGCAGAACAATGTGGAACACAAGGTTGAAACTTTTTCTGGTGTCTATAAGAAGCTCACGGGCAAGGATGTTAATTT
TGAATTCCCAGAGTTTCAATTGTAA

Library Parental gene expression (RPM)
SRP051959_colon 67 .92 RPM
SRP051959_heart 58 .48 RPM
SRP051959_kidney 80 .80 RPM
SRP051959_liver 115 .36 RPM
SRP051959_lung 97 .67 RPM
SRP051959_lymph_node 161 .16 RPM
SRP051959_skeletal_muscle 70 .32 RPM
SRP051959_spleen 117 .98 RPM



Species Parental gene accession Homology type Retrogenes number
Ailuropoda melanoleuca ENSAMEG00000018435 possible_ortholog 2 retrogenes
retro_amel_391, retro_amel_914,
Bos taurus ENSBTAG00000016224 possible_ortholog 5 retrogenes
retro_btau_1016, retro_btau_1046, retro_btau_1351, retro_btau_448, retro_btau_997,
Canis familiaris ENSCAFG00000003263 possible_ortholog 1 retrogene
retro_cfam_1798,
Cavia porcellus ENSCPOG00000009795 possible_ortholog 2 retrogenes
retro_cpor_1139, retro_cpor_773,
Dasypus novemcinctus ENSDNOG00000013285 possible_ortholog 14 retrogenes
retro_dnov_1091, retro_dnov_1351, retro_dnov_1388, retro_dnov_1459, retro_dnov_1688, retro_dnov_1849, retro_dnov_1940, retro_dnov_1970, retro_dnov_238, retro_dnov_2409, retro_dnov_558, retro_dnov_582, retro_dnov_623, retro_dnov_791,
Equus caballus ENSECAG00000020253 possible_ortholog 2 retrogenes
retro_ecab_276, retro_ecab_396,
Loxodonta africana ENSLAFG00000015087 ortholog_one2many 11 retrogenes
retro_lafr_1223, retro_lafr_160, retro_lafr_217, retro_lafr_318, retro_lafr_319, retro_lafr_413, retro_lafr_514, retro_lafr_720, retro_lafr_786, retro_lafr_964, retro_lafr_970,
Myotis lucifugus ENSMLUG00000006121 possible_ortholog 1 retrogene
retro_mluc_1118,
Macaca mulatta ENSMMUG00000011870 possible_ortholog 7 retrogenes
retro_mmul_1831, retro_mmul_1846, retro_mmul_1929, retro_mmul_23, retro_mmul_2403, retro_mmul_2540, retro_mmul_357,
Monodelphis domestica ENSMODG00000014495 ortholog_one2many 2 retrogenes
retro_mdom_662, retro_mdom_810,
Mus musculus ENSMUSG00000061477 possible_ortholog 2 retrogenes
retro_mmus_271, retro_mmus_53,
Nomascus leucogenys ENSNLEG00000015407 possible_ortholog 10 retrogenes
retro_nleu_1505, retro_nleu_1771, retro_nleu_1783, retro_nleu_2278, retro_nleu_2346, retro_nleu_2510, retro_nleu_2892, retro_nleu_3080, retro_nleu_817, retro_nleu_835,
Oryctolagus cuniculus ENSOCUG00000008507 possible_ortholog 2 retrogenes
retro_ocun_203, retro_ocun_230,
Otolemur garnettii ENSOGAG00000028165 ortholog_one2many 1 retrogene
retro_ogar_133,
Pongo abelii ENSPPYG00000025872 possible_ortholog 12 retrogenes
retro_pabe_1033, retro_pabe_1555, retro_pabe_2506, retro_pabe_2982, retro_pabe_2983, retro_pabe_31, retro_pabe_313, retro_pabe_360, retro_pabe_3659, retro_pabe_3803, retro_pabe_499, retro_pabe_524,
Pan troglodytes ENSPTRG00000011615 ortholog_one2many 3 retrogenes
retro_ptro_202, retro_ptro_3132, retro_ptro_58,
Rattus norvegicus ENSRNOG00000008551 possible_ortholog 2 retrogenes
retro_rnor_39, retro_rnor_391,
Sus scrofa ENSSSCG00000027353 possible_ortholog 5 retrogenes
retro_sscr_136, retro_sscr_137, retro_sscr_240, retro_sscr_364, retro_sscr_956,
Ictidomys tridecemlineatus ENSSTOG00000024830 possible_ortholog 3 retrogenes
retro_itri_1147, retro_itri_1161, retro_itri_1215,
Tursiops truncatus ENSTTRG00000001616 possible_ortholog 6 retrogenes
retro_ttru_1422, retro_ttru_1659, retro_ttru_1706, retro_ttru_301, retro_ttru_323, retro_ttru_773,

# RetrogeneDB ID Identity (%) Coverage (%) ORF conservation Expression evidence RDV
1. retro_cjac_16 100.00 100.00
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2. retro_cjac_2287 64.06 100.00
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Download FASTA sequences of all ENSCJAG00000016462 retrocopies