RetrogeneDB ID: | retro_cfam_548 | ||
Retrocopylocation | Organism: | Dog (Canis familiaris) | |
Coordinates: | 13:32944010..32944395(+) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | IMMP1L | ||
Ensembl ID: | ENSCAFG00000007514 | ||
Aliases: | None | ||
Description: | IMP1 inner mitochondrial membrane peptidase-like (S. cerevisiae) [Source:HGNC Symbol;Acc:26317] |
Percent Identity: | 61.03 % |
Parental protein coverage: | 66.34 % |
Number of stop codons detected: | 3 |
Number of frameshifts detected | 2 |
Parental | VVMCSGPSMEPTIQNSDIVFAENLS-RHFYGIQRGDIVIAKSPSDPKSNICKRVIGLEGDKILTSSPSDF |
V..C.GPS.EP.IQN.DI.FAENL...HF.G.Q..DIVIA.S...P...IC.R..GL.GDKIL..SP.DF | |
Retrocopy | VPLCIGPSVEPSIQN*DIFFAENLT<QHFHGVQIDDIVIAESSTNPNL-ICVRILGLQGDKILINSPPDF |
Parental | FKSHNYVPTGHVWLEGDNLQNSTDSRYYGPIPYGLIRGRIF-FKIWPLSDFGFLRDSPNGHRFSDD |
F.SH.YVPTGHV.LEGD.LQ.ST..R.YG.IPY.LIR...F..K.W.LS.F.F....PNG.RF.DD | |
Retrocopy | FTSHDYVPTGHV*LEGDDLQDSTEFR*YGTIPYRLIRQPVF<LKMWLLSNFEF----PNGNRFCDD |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP012049_cerebellum | 0 .00 RPM | 19 .95 RPM |
SRP017611_brain | 0 .00 RPM | 9 .45 RPM |
SRP017611_kidney | 0 .00 RPM | 31 .04 RPM |
SRP017611_liver | 0 .00 RPM | 7 .11 RPM |
Species | RetrogeneDB ID |
---|---|
Equus caballus | retro_ecab_1019 |