RetrogeneDB ID: | retro_ptro_547 | ||
Retrocopylocation | Organism: | Chimpanzee (Pan troglodytes) | |
Coordinates: | 11:61554466..61554965(+) | ||
Located in intron of: | ENSPTRG00000003807 | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | IMMP1L | ||
Ensembl ID: | ENSPTRG00000003472 | ||
Aliases: | None | ||
Description: | IMP1 inner mitochondrial membrane peptidase-like (S. cerevisiae) [Source:HGNC Symbol;Acc:26317] |
Percent Identity: | 88.76 % |
Parental protein coverage: | 100. % |
Number of stop codons detected: | 1 |
Number of frameshifts detected | 3 |
Parental | MLRGVLGK-TFRLVGYTIQYGCIAHCAFEYVGGVVMCSGPSMEPTIQNSDIVFAENLSRHFYGIQRGDIV |
MLRG.LGK.TF.LVGY.IQYGCIAHCAFEYVGGVVMCSGPSMEPTIQNSD.VFAENLSRHFY.IQRGDIV | |
Retrocopy | MLRGALGK<TF*LVGYAIQYGCIAHCAFEYVGGVVMCSGPSMEPTIQNSDTVFAENLSRHFYSIQRGDIV |
Parental | IAKSPSDPKSNICKRVIGLEGDKILTTSPSDFFKSHSYVPMGHVWLEGD-NLQNSTDSRCYGPIPYGLIR |
IAKSPSDP.SN.CKRV.GLEGDKILTTSPSDFFKS.SYVP.GHVWLEGD.NLQNSTDS..YGPIPY.LIR | |
Retrocopy | IAKSPSDPTSNLCKRVTGLEGDKILTTSPSDFFKSYSYVPVGHVWLEGD>NLQNSTDSSYYGPIPYELIR |
Parental | GRIF-FKIWPLSDFGFLRASPNGHRFSDD |
GRIF.FKI.PLSDFGFL.AS.NGHRFSDD | |
Retrocopy | GRIF>FKIRPLSDFGFLCASLNGHRFSDD |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP007412_brain_prefrontal_cortex | 0 .04 RPM | 2 .70 RPM |
SRP007412_cerebellum | 0 .07 RPM | 2 .01 RPM |
SRP007412_heart | 0 .00 RPM | 2 .13 RPM |
SRP007412_kidney | 0 .03 RPM | 3 .56 RPM |
SRP007412_liver | 0 .03 RPM | 1 .11 RPM |
SRP007412_testis | 1 .16 RPM | 6 .22 RPM |
Species | RetrogeneDB ID |
---|---|
Gorilla gorilla | retro_ggor_651 |