Parental gene:

IMMP1L, ENSECAG00000020512

Aliases:None
Description:IMP1 inner mitochondrial membrane peptidase-like (S. cerevisiae) [Source:HGNC Symbol;Acc:26317]
Organism:Horse (Equus caballus)
Coordinates:7:97214840..97413622(-)


>ENSECAG00000020512
ATGCTCCGTGGTATTCTGGGGAAAACCTTTCGCCTTGTTGGCTACACTATCCAGTACGCCTGCATAGCTCACTGTGCTTT
TGAATACGTTGGTGGTGTTGTCATGTGTTCTGGACCATCAATGGAGCCTACAATTCAAAATTCAGATATTGTCTGTGCAG
AAAATCTTAGTCGACATTTTTATGGTATCCAAAGAGGTGACATTGTGATTGCAAAAAGCCCGAGTGATCCAAAGTCAAAT
ATTTGTAAAAGAGTAATTGGTTTGGAAGGAGACAAAATCCTCACCAGTCGTCCATCAGATTTCTTTAAAAGCCATAATTA
TGTGCCAACAGGTCACGTCTGGTTAGAAGGTGACAACCTACAGAATTCTACAGATTCCAGGTACTATGGACCTGTTCCCT
ACGGACTAATAAGAGGACGCATCTTCTTTAAGATTTGGCCCCTGAGTGACTTTGGATTTCTGCGTGACAGCCCTAATGGC
CACCGATCTCCCGGTGATTAG

Library Parental gene expression (RPM)
SRP021940_articular_cartilage 3 .36 RPM
SRP021940_cerebellum 9 .56 RPM
SRP021940_embryo 5 .88 RPM
SRP021940_placental_villous 6 .64 RPM
SRP021940_synovial_membrane 3 .18 RPM
SRP021940_testis 7 .93 RPM



Species Parental gene accession Homology type Retrogenes number
Ailuropoda melanoleuca ENSAMEG00000006876 ortholog_one2one 1 retrogene
retro_amel_623,
Bos taurus ENSBTAG00000000475 ortholog_one2one 1 retrogene
retro_btau_528,
Canis familiaris ENSCAFG00000007514 ortholog_one2one 2 retrogenes
retro_cfam_1757, retro_cfam_548,
Choloepus hoffmanni ENSCHOG00000010106 ortholog_one2one 4 retrogenes
retro_chof_1157, retro_chof_1665, retro_chof_2427, retro_chof_358,
Callithrix jacchus ENSCJAG00000006042 ortholog_one2one 1 retrogene
retro_cjac_1240,
Dipodomys ordii ENSDORG00000000250 ortholog_one2one 4 retrogenes
retro_dord_144, retro_dord_205, retro_dord_243, retro_dord_726,
Echinops telfairi ENSETEG00000003057 ortholog_one2one 1 retrogene
retro_etel_1971,
Homo sapiens ENSG00000148950 ortholog_one2one 1 retrogene
retro_hsap_786,
Gorilla gorilla ENSGGOG00000014897 ortholog_one2one 1 retrogene
retro_ggor_651,
Myotis lucifugus ENSMLUG00000006504 ortholog_one2many 2 retrogenes
retro_mluc_2105, retro_mluc_385,
Macaca mulatta ENSMMUG00000016806 ortholog_one2one 1 retrogene
retro_mmul_1092,
Mus musculus ENSMUSG00000042670 ortholog_one2one 2 retrogenes
retro_mmus_2571, retro_mmus_591,
Nomascus leucogenys ENSNLEG00000017882 ortholog_one2one 1 retrogene
retro_nleu_2484,
Oryctolagus cuniculus ENSOCUG00000029612 ortholog_one2one 1 retrogene
retro_ocun_388,
Otolemur garnettii ENSOGAG00000007853 ortholog_one2one 3 retrogenes
retro_ogar_1202, retro_ogar_2006, retro_ogar_2643,
Pongo abelii ENSPPYG00000003389 ortholog_one2one 1 retrogene
retro_pabe_747,
Pan troglodytes ENSPTRG00000003472 ortholog_one2one 1 retrogene
retro_ptro_547,
Pteropus vampyrus ENSPVAG00000015535 ortholog_one2one 1 retrogene
retro_pvam_932,
Rattus norvegicus ENSRNOG00000004829 ortholog_one2one 1 retrogene
retro_rnor_2450,
Sarcophilus harrisii ENSSHAG00000015407 ortholog_one2one 2 retrogenes
retro_shar_396, retro_shar_491,
Sus scrofa ENSSSCG00000013322 ortholog_one2one 1 retrogene
retro_sscr_1178,
Ictidomys tridecemlineatus ENSSTOG00000003179 ortholog_one2one 2 retrogenes
retro_itri_489, retro_itri_623,
Tupaia belangeri ENSTBEG00000002126 ortholog_one2one 6 retrogenes
retro_tbel_1510, retro_tbel_2503, retro_tbel_315, retro_tbel_3504, retro_tbel_4049, retro_tbel_878,
Tarsius syrichta ENSTSYG00000009257 ortholog_one2one 1 retrogene
retro_tsyr_2139,
Tursiops truncatus ENSTTRG00000002395 ortholog_one2one 2 retrogenes
retro_ttru_1862, retro_ttru_966,
Vicugna pacos ENSVPAG00000001940 ortholog_one2one 1 retrogene
retro_vpac_126,

# RetrogeneDB ID Identity (%) Coverage (%) ORF conservation Expression evidence RDV
1. retro_ecab_159 79.34 72.89
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2. retro_ecab_920 72.00 59.64
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3. retro_ecab_1019 64.29 75.30
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Download FASTA sequences of all ENSECAG00000020512 retrocopies