RetrogeneDB ID: | retro_cfam_929 | ||
Retrocopylocation | Organism: | Dog (Canis familiaris) | |
Coordinates: | 2:41813656..41813917(-) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | None | ||
Ensembl ID: | ENSCAFG00000006913 | ||
Aliases: | None | ||
Description: | None |
Percent Identity: | 75.86 % |
Parental protein coverage: | 100. % |
Number of stop codons detected: | 0 |
Number of frameshifts detected | 0 |
Parental | MAEDIKSKIKNYQTAPFDSRFPNQNQTRNCWQNYLDFHRCEKAMT-AKGGDVSVCEWYRRVYKSLCPISW |
M.EDIK.KIKNYQ.APFDS.FPNQNQTRNCW.NYLDFH.CEKAM..AKGGDVSV....R.VYKSLC.ISW | |
Retrocopy | MVEDIKTKIKNYQAAPFDSCFPNQNQTRNCWWNYLDFHHCEKAMSAAKGGDVSVRKGHRHVYKSLCAISW |
Parental | VSAWDDRRAEGTFPGKI |
.SAW.D..AEG.F.G.I | |
Retrocopy | LSAWNDHQAEGMFLGNI |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP012049_cerebellum | 0 .00 RPM | 97 .52 RPM |
SRP017611_brain | 0 .00 RPM | 59 .70 RPM |
SRP017611_kidney | 0 .00 RPM | 255 .37 RPM |
SRP017611_liver | 0 .00 RPM | 64 .68 RPM |