RetrogeneDB ID: | retro_chof_1089 | ||
Retrocopylocation | Organism: | Sloth (Choloepus hoffmanni) | |
Coordinates: | scaffold_196871:3674..4304(-) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | None | ||
Ensembl ID: | ENSCHOG00000007181 | ||
Aliases: | None | ||
Description: | None |
Percent Identity: | 92.86 % |
Parental protein coverage: | 57.22 % |
Number of stop codons detected: | 0 |
Number of frameshifts detected | 0 |
Parental | MLSHQLKQHVIDGEKTIIQNPTDQQ--DHEKAEFEVHEVYAVDVLVSSGEGKAKDAGQRTTIYKRDPSKQ |
MLSHQLKQHVIDGEKTIIQNPTDQQ..DHEKAEFEVHEVYAVDVL..SGEGKAKDAGQRTTIYKRDPSKQ | |
Retrocopy | MLSHQLKQHVIDGEKTIIQNPTDQQKKDHEKAEFEVHEVYAVDVLACSGEGKAKDAGQRTTIYKRDPSKQ |
Parental | YGLKMKTSRAFFSEVERRFDAMPFTLRAFDEKK--RMGVVECAKHELLQPFNVLYEKEGEFVAQFKFTVL |
YGLKMKTSRAFFSEVERRFDAMPFTLRAF...K..RMGVVECAKHELLQPFNVLYEKEGEFVAQFKFTVL | |
Retrocopy | YGLKMKTSRAFFSEVERRFDAMPFTLRAFEDEKKARMGVVECAKHELLQPFNVLYEKEGEFVAQFKFTVL |
Parental | LMPNGPMRITSGPFEPDLYKSEMEVQDAELKALLQSSASRKTQKKKKKKASKTAENATSGETLEENDAGD |
LMPNGPMRITSGPFEPDLYKSEMEVQDAELKALLQSSAS.KTQ.....KASKTAENATSGETLEENDAGD | |
Retrocopy | LMPNGPMRITSGPFEPDLYKSEMEVQDAELKALLQSSASQKTQXXXXXKASKTAENATSGETLEENDAGD |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Choloepus hoffmanni | ENSCHOG00000007181 | 2 retrocopies |
retro_chof_1089 , retro_chof_1847,
|
Callithrix jacchus | ENSCJAG00000011811 | 2 retrocopies | |
Homo sapiens | ENSG00000170515 | 6 retrocopies | |
Macaca mulatta | ENSMMUG00000002164 | 2 retrocopies | |
Mus musculus | ENSMUSG00000025364 | 1 retrocopy | |
Nomascus leucogenys | ENSNLEG00000017544 | 6 retrocopies | |
Oryctolagus cuniculus | ENSOCUG00000017342 | 1 retrocopy | |
Pongo abelii | ENSPPYG00000025851 | 7 retrocopies | |
Pan troglodytes | ENSPTRG00000005076 | 6 retrocopies | |
Sus scrofa | ENSSSCG00000000377 | 1 retrocopy | |
Sus scrofa | ENSSSCG00000022666 | 2 retrocopies | |
Tarsius syrichta | ENSTSYG00000006777 | 1 retrocopy | |
Vicugna pacos | ENSVPAG00000009523 | 1 retrocopy |