RetrogeneDB ID: | retro_chof_1293 | ||
Retrocopylocation | Organism: | Sloth (Choloepus hoffmanni) | |
Coordinates: | scaffold_25340:5742..6251(+) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | ANP32B | ||
Ensembl ID: | ENSCHOG00000005149 | ||
Aliases: | None | ||
Description: | acidic (leucine-rich) nuclear phosphoprotein 32 family, member B [Source:HGNC Symbol;Acc:16677] |
Percent Identity: | 60.47 % |
Parental protein coverage: | 66.8 % |
Number of stop codons detected: | 1 |
Number of frameshifts detected | 1 |
Parental | MDMKRRI-HLELRNRTPPAVRELVLDNCKSNDGKIEGLTAEFVNLEFLSLINVGLISVSNLPKLPKLKKL |
M.MK.RI..LELRNR....V..LVLDNC....G..EGL...F..LEFLS..NV.L.S...LP.L.KL.KL | |
Retrocopy | MEMKKRI<YLELRNRILEEVTKLVLDNCCCVIGETEGLNDTFKELEFLSMANVELNSLARLPSLHKLWKL |
Parental | ELSDNRIFGGLDMLAEKLPNLTHLNLSGNKLKDISTLEPLKKLDCLKSLDLFNCEVTNLNDYRESVFRLL |
ELSDN.I.GGL..LAEK.PNLT..NLS.NK.KD.ST.E.L..L...KSLDLFNCE.TNL.DYRES.F..L | |
Retrocopy | ELSDNIISGGLEVLAEKCPNLTYVNLSRNKIKDLSTVEAL*NLKNCKSLDLFNCEITNLEDYRESIFEPL |
Parental | PQLTYLDGYDREDREAPDSDAEVDGVDEEEDD |
.Q.TYL.G.D.ED.EAP.S..E..G.D..E.D | |
Retrocopy | QQITYLGGFDQEDNEAPFSEEE-EGEDGDEYD |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Choloepus hoffmanni | ENSCHOG00000005149 | 6 retrocopies | |
Cavia porcellus | ENSCPOG00000020118 | 3 retrocopies | |
Equus caballus | ENSECAG00000012310 | 2 retrocopies | |
Echinops telfairi | ENSETEG00000015514 | 4 retrocopies | |
Homo sapiens | ENSG00000136938 | 2 retrocopies | |
Myotis lucifugus | ENSMLUG00000004844 | 2 retrocopies | |
Macaca mulatta | ENSMMUG00000012242 | 1 retrocopy | |
Monodelphis domestica | ENSMODG00000003261 | 1 retrocopy | |
Mustela putorius furo | ENSMPUG00000006433 | 1 retrocopy | |
Mus musculus | ENSMUSG00000028333 | 1 retrocopy | |
Nomascus leucogenys | ENSNLEG00000016941 | 1 retrocopy | |
Otolemur garnettii | ENSOGAG00000006091 | 2 retrocopies | |
Pongo abelii | ENSPPYG00000019430 | 2 retrocopies | |
Pan troglodytes | ENSPTRG00000021172 | 3 retrocopies | |
Pteropus vampyrus | ENSPVAG00000006569 | 1 retrocopy | |
Sorex araneus | ENSSARG00000000804 | 1 retrocopy | |
Tupaia belangeri | ENSTBEG00000002189 | 8 retrocopies | |
Tursiops truncatus | ENSTTRG00000010825 | 2 retrocopies |