RetrogeneDB ID: | retro_mluc_1787 | ||
Retrocopylocation | Organism: | Microbat (Myotis lucifugus) | |
Coordinates: | GL429908:1698995..1699600(-) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | ENSMLUG00000029363 | |
Aliases: | None | ||
Status: | KNOWN_PSEUDOGENE | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | ANP32B | ||
Ensembl ID: | ENSMLUG00000004844 | ||
Aliases: | None | ||
Description: | None |
Percent Identity: | 72.55 % |
Parental protein coverage: | 72.76 % |
Number of stop codons detected: | 1 |
Number of frameshifts detected | 1 |
Parental | VRELVLDNCKSDDGKIEGLTDEFVNLEFLSLINVGLISVSNLPKLPKLKKLELSDNRISGCLDMLAEKLP |
V.ELVLDNCKSDDGK.EGLT.EFVNLEFLSLINVGLISVSN.PKLPKLKKLELSD.RISGCLDMLAEKLP | |
Retrocopy | VQELVLDNCKSDDGKTEGLTAEFVNLEFLSLINVGLISVSNFPKLPKLKKLELSDKRISGCLDMLAEKLP |
Parental | NLTHLNLSGNKLKDISTLEPLKKL-ECLKSLDLFNCEVTNLNDYRESVFKLLPQLTYLDGYDREDREAPD |
NLTHLNLSGNKLKDISTLEP.KKL.ECLKSLDLFNCEVTNL.DY.ESVFKLLPQLT.LDG.D.EDREAPD | |
Retrocopy | NLTHLNLSGNKLKDISTLEPVKKL<ECLKSLDLFNCEVTNLTDY*ESVFKLLPQLTLLDGSDQEDREAPD |
Parental | SDAEVDGVDEEEDDEDSEVESVLAKQKRLFSEGEDEEDEEDEDGEEEEFDDEEDEDEDEDVEGE |
S.AEVD.VD....................F...EDE.......GEE.E.D....E.E.....GE | |
Retrocopy | SEAEVDLVDXXXXXXXXXXXXXXXXXXXXFDDEEDEDKDKVVKGEEDE-DEVSGEEEEFGHDGE |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Choloepus hoffmanni | ENSCHOG00000005149 | 6 retrocopies | |
Cavia porcellus | ENSCPOG00000020118 | 3 retrocopies | |
Equus caballus | ENSECAG00000012310 | 2 retrocopies | |
Echinops telfairi | ENSETEG00000015514 | 4 retrocopies | |
Homo sapiens | ENSG00000136938 | 2 retrocopies | |
Myotis lucifugus | ENSMLUG00000004844 | 2 retrocopies |
retro_mluc_1787 , retro_mluc_1788,
|
Macaca mulatta | ENSMMUG00000012242 | 1 retrocopy | |
Monodelphis domestica | ENSMODG00000003261 | 1 retrocopy | |
Mustela putorius furo | ENSMPUG00000006433 | 1 retrocopy | |
Mus musculus | ENSMUSG00000028333 | 1 retrocopy | |
Nomascus leucogenys | ENSNLEG00000016941 | 1 retrocopy | |
Otolemur garnettii | ENSOGAG00000006091 | 2 retrocopies | |
Pongo abelii | ENSPPYG00000019430 | 2 retrocopies | |
Pan troglodytes | ENSPTRG00000021172 | 3 retrocopies | |
Sorex araneus | ENSSARG00000000804 | 1 retrocopy | |
Tupaia belangeri | ENSTBEG00000002189 | 8 retrocopies | |
Tursiops truncatus | ENSTTRG00000010825 | 2 retrocopies |