RetrogeneDB ID: retro_mluc_1788

Retrocopy location

• Organism: Microbat (Myotis lucifugus)
• Coordinates: GL429908:1810081..1810556(-)
• Located in intron of: ENSMLUG00000023603

Retrocopy information

• Ensembl ID: None
• Aliases: None
• Status: NOVEL

Parental gene information

• Parental gene symbol: ANP32B
• Ensembl ID: ENSMLUG00000004844
• Aliases: None
• Description: None

Sequence

>retro_mluc_1788
GTTCAAGAACTTGTCCTGGACAATTGCAAATCAGATGATGGGAAACTGAGGGCTTAACAGCTGAATTTGTGAACTTAGAG
TTCCTCAGTTTAATAAATGTAGGCTTGATTTCAGTTTCAAATTTCCCCAAACTACCAAAATTGAAAAAGCTTGAACTCAG
TGACAATACAATCTCTGGATGTTTGGACATGTTGGCAGAAAAACTTCCAAATGTCACACATCTAAATTTAAGTGGAAATA
AACTGAAAGATATCAGTACCTTGGAACCTTTGAAAAAGTTGAATGTCGGAAAAGCCTGGATCTGTTTAACTGTGAGGTTA
CTAACCTGAATGACTACTGAGAAATTGTCTTCAAACTCTTGCCCCAGCTGACCTACCTGGATGGCTATGACCAAGAGGAT
CGAGAAGCTCCTGACTCAGATGCTGAGGTGGACTGTGTGGATGAAAAAGAGGATGATGAAGAAGGAGAAGATGAG

Alignment

ORF - retro_mluc_1788 Open Reading Frame is not conserved.

Retrocopy - Parental Gene Alignment summary:

• Percent Identity: 89.44 %
• Parental protein coverage: 56.99 %
• Number of stop codons detected: 1
• Number of frameshifts detected: 2

Retrocopy - Parental Gene Alignment:

Parental  VRELVLDNCKSDDGKI-EGLTDEFVNLEFLSLINVGLISVSNLPKLPKLKKLELSDNRISGCLDMLAEKL
          V.ELVLDNCKSDDGK..EGLT.EFVNLEFLSLINVGLISVSN.PKLPKLKKLELSDN.ISGCLDMLAEKL
Retrocopy VQELVLDNCKSDDGKL<EGLTAEFVNLEFLSLINVGLISVSNFPKLPKLKKLELSDNTISGCLDMLAEKL

Parental  PNLTHLNLSGNKLKDISTLEPLKKL-ECLKSLDLFNCEVTNLNDYRESVFKLLPQLTYLDGYDREDREAP
          PN.THLNLSGNKLKDISTLEPLKKL.EC.KSLDLFNCEVTNLNDY.E.VFKLLPQLTYLDGYD.EDREAP
Retrocopy PNVTHLNLSGNKLKDISTLEPLKKL<ECRKSLDLFNCEVTNLNDY*EIVFKLLPQLTYLDGYDQEDREAP

Parental  DSDAEVDGVDEEEDDEDSEVE
          DSDAEVD.VDE.EDDE..E.E
Retrocopy DSDAEVDCVDEKEDDEEGEDE

Legend:

• *: Stop codon
• >: Forward frameshift by one nucleotide
• <: Reverse frameshift by one nucleotide

Expression

RNA-Seq

Myotis lucifugus was not studied using RNA-Seq expression data.

ChIP-Seq

Myotis lucifugus was not studied using ChIP-Seq data.

EST

Myotis lucifugus was not studied using EST data.

TSS

Myotis lucifugus was not studied using FANTOM5 data.

Lab

retro_mluc_1788 was not experimentally validated.

Homology

Retrocopy orthology:

Myotis lucifugus does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to help section.

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Parental genes homology:

Parental genes homology involve 17 parental genes, and 42 retrocopies.

Species	Parental gene accession	Retrocopies number
Choloepus hoffmanni	ENSCHOG00000005149	6 retrocopies	retro_chof_1293, retro_chof_1456, retro_chof_19, retro_chof_2244, retro_chof_588, retro_chof_681,
Cavia porcellus	ENSCPOG00000020118	3 retrocopies	retro_cpor_1336, retro_cpor_493, retro_cpor_509,
Equus caballus	ENSECAG00000012310	2 retrocopies	retro_ecab_246, retro_ecab_826,
Echinops telfairi	ENSETEG00000015514	4 retrocopies	retro_etel_2053, retro_etel_2167, retro_etel_510, retro_etel_677,
Homo sapiens	ENSG00000136938	2 retrocopies	retro_hsap_1597, retro_hsap_1603,
Myotis lucifugus	ENSMLUG00000004844	2 retrocopies	retro_mluc_1787, retro_mluc_1788 ,
Macaca mulatta	ENSMMUG00000012242	1 retrocopy	retro_mmul_2600,
Monodelphis domestica	ENSMODG00000003261	1 retrocopy	retro_mdom_763,
Mustela putorius furo	ENSMPUG00000006433	1 retrocopy	retro_mputfur_1392,
Mus musculus	ENSMUSG00000028333	1 retrocopy	retro_mmus_2399,
Nomascus leucogenys	ENSNLEG00000016941	1 retrocopy	retro_nleu_3009,
Otolemur garnettii	ENSOGAG00000006091	2 retrocopies	retro_ogar_1915, retro_ogar_3282,
Pongo abelii	ENSPPYG00000019430	2 retrocopies	retro_pabe_1312, retro_pabe_1316,
Pan troglodytes	ENSPTRG00000021172	3 retrocopies	retro_ptro_1073, retro_ptro_1075, retro_ptro_40,
Sorex araneus	ENSSARG00000000804	1 retrocopy	retro_sara_549,
Tupaia belangeri	ENSTBEG00000002189	8 retrocopies	retro_tbel_1659, retro_tbel_2710, retro_tbel_2772, retro_tbel_3770, retro_tbel_3863, retro_tbel_4351, retro_tbel_4361, retro_tbel_491,
Tursiops truncatus	ENSTTRG00000010825	2 retrocopies	retro_ttru_1899, retro_ttru_341,