RetrogeneDB ID: | retro_chof_77 | ||
Retrocopylocation | Organism: | Sloth (Choloepus hoffmanni) | |
Coordinates: | GeneScaffold_1446:12871..13657(+) | ||
Located in intron of: | ENSCHOG00000004728 | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | PSMA1 | ||
Ensembl ID: | ENSCHOG00000005395 | ||
Aliases: | None | ||
Description: | proteasome (prosome, macropain) subunit, alpha type, 1 [Source:HGNC Symbol;Acc:9530] |
Percent Identity: | 97.71 % |
Parental protein coverage: | 97.4 % |
Number of stop codons detected: | 0 |
Number of frameshifts detected | 0 |
Parental | FRNQYDNDVTVWSPQGRIHQIEYAMEAVKQGSATVGLKSKTHAVLVALKRAQSELAAHQKKILHVDNHIG |
FRNQYDNDVTVWSPQGRIHQIEYAMEAVKQGSATVGLKSKTHAVLVALKRAQSELAAH....LHVDNHIG | |
Retrocopy | FRNQYDNDVTVWSPQGRIHQIEYAMEAVKQGSATVGLKSKTHAVLVALKRAQSELAAHXXXXLHVDNHIG |
Parental | ISIAGLTADARLLCNFMRQECLDSRFVFDRPLPVSRLVSLIGSKTQIPTQRYGRRPYGVGLLIAGYDDMG |
ISIAGLTADARLLCNFMRQECLDSRFVFDRPLPVSRLVSLIGSKTQIPTQRYGR.PYGVGLLIAGYDDMG | |
Retrocopy | ISIAGLTADARLLCNFMRQECLDSRFVFDRPLPVSRLVSLIGSKTQIPTQRYGRGPYGVGLLIAGYDDMG |
Parental | PHIFQTCPSANYFDCRAMSIGARSQSARTYLERHMSEFMECNLNELVKHGLRALRETLPAEQDLTTKNVS |
PHIFQTCPSANYFDCRAMSIGARSQSARTYLERHMSEFMECNLNELVKHGLRALRETLPAEQDLTTKNVS | |
Retrocopy | PHIFQTCPSANYFDCRAMSIGARSQSARTYLERHMSEFMECNLNELVKHGLRALRETLPAEQDLTTKNVS |
Parental | IGIVGQDLEFTIYDDDDVSPFLEGLEERPQRKTQPAQPSEEPAEKADEPMEH |
IGIVGQDLEFTIYDDDDVSPFLEGLEER.QRKTQPAQPSEEPAEKADEPMEH | |
Retrocopy | IGIVGQDLEFTIYDDDDVSPFLEGLEERLQRKTQPAQPSEEPAEKADEPMEH |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |