RetrogeneDB ID: | retro_opri_370 | ||
Retrocopylocation | Organism: | Southern American pika (Ochotona princeps) | |
Coordinates: | scaffold_10210:58498..58908(+) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | PSMA1 | ||
Ensembl ID: | ENSOPRG00000013677 | ||
Aliases: | None | ||
Description: | proteasome (prosome, macropain) subunit, alpha type, 1 [Source:HGNC Symbol;Acc:9530] |
Percent Identity: | 82.01 % |
Parental protein coverage: | 52.87 % |
Number of stop codons detected: | 1 |
Number of frameshifts detected | 1 |
Parental | RPYGVGLLIAGYDDMGPHIFQTCPSANYFDCRAMSIGARSQSARTYLERHMSEFMECNLNELVKHGLHAL |
RP.G.GLLIAG.DDMGPH.FQTCPSANYFDC.AM.IGARSQS..TYLERH.SEFMECNLNELVKHGL.AL | |
Retrocopy | RP*GIGLLIAGHDDMGPHTFQTCPSANYFDCSAMCIGARSQSTHTYLERHTSEFMECNLNELVKHGLRAL |
Parental | RETLPAEQDLTTKNV-SIGIVGKDLEFTIYDDDDVSPFLEGLEERPQRKAQPAQPTDEPAEKADEPMEH |
R..L.AEQ.LTTK...S.GIVGK.LEFT.YDDDDVSPFLEGLEERPQRKA.PAQP..E..EKADEPMEH | |
Retrocopy | RQILHAEQNLTTKDI<STGIVGKHLEFTVYDDDDVSPFLEGLEERPQRKAPPAQP-GEAVEKADEPMEH |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |