RetrogeneDB ID: | retro_chof_2376 | ||
Retrocopylocation | Organism: | Sloth (Choloepus hoffmanni) | |
Coordinates: | scaffold_69727:9418..9879(-) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | PSMA1 | ||
Ensembl ID: | ENSCHOG00000005395 | ||
Aliases: | None | ||
Description: | proteasome (prosome, macropain) subunit, alpha type, 1 [Source:HGNC Symbol;Acc:9530] |
Percent Identity: | 90.97 % |
Parental protein coverage: | 57.25 % |
Number of stop codons detected: | 1 |
Number of frameshifts detected | 1 |
Parental | SLIGSKTQIPTQRYGRRPYGVGLLIAGYDDMGPHIFQTCPSANYFDCRAMSIGARSQSARTYLERHMSEF |
SLIG.KTQIPTQ.YG.RPYG.GLLIAGYDDMGPHIFQTCPSANYFDCRAMSIGARSQSARTYLERH.SEF | |
Retrocopy | SLIGRKTQIPTQ*YGQRPYGMGLLIAGYDDMGPHIFQTCPSANYFDCRAMSIGARSQSARTYLERHISEF |
Parental | MECNLNELVKHGLRALRETLPAEQDLTTKNVSIGIVGQDLEFTIYDDD-DVSPFLEGLEERPQRKTQPAQ |
M.CNLNELVKHGL.ALRET.PA.QDLTTKNVSIGIVG.DLEFTIYDDD..VSPFLEGLEERPQRKTQPAQ | |
Retrocopy | MKCNLNELVKHGLCALRETIPAVQDLTTKNVSIGIVGKDLEFTIYDDD<CVSPFLEGLEERPQRKTQPAQ |
Parental | PSEEPAEKADEPMEH |
PS.EPAEKADE.MEH | |
Retrocopy | PSDEPAEKADEQMEH |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |