Parental gene:

PSMA1, ENSPPYG00000003466

Aliases:None
Description:proteasome subunit alpha type-1 [Source:RefSeq peptide;Acc:NP_001124812]
Organism:Orangutan (Pongo abelii)
Coordinates:11:55600174..55616117(+)


>ENSPPYG00000003466
ATGTTTCGAAATCAGTATGACAATGATGTCACTGTTTGGAGCCCTCAGGGCAGGATTCATCAAATTGAATATGCAATGGA
AGCTGTTAAACAAGGTTCAGCCACAGTTGGTCTGAAATCAAAAACTCATGCGGTGTTGGTTGCATTGAAAAGGGCACAAT
CAGAGCTTGCAGCTCATCAGAAAAAAATTCTCCATGTTGACAACCATATTGGTATCTCAATTGCGGGGCTTACTGCTGAT
GCTAGACTGTTATGTAATTTTATGCGTCAGGAGTGTTTGGATTCCAGATTTGTATTCGATAGACCACTGCCTGTGTCTCG
TCTTGTATCTCTAATTGGAAGCAAGACCCAGATACCAACACAACGATATGGCCGGAGACCATATGGTGTTGGGCTGCTTA
TTGCTGGTTATGATGACATGGGCCCTCACATTTTCCAAACCTGTCCATCTGCTAACTATTTTGACTGCAGAGCCATGTCC
ATTGGAGCCCGTTCCCAATCAGCTCGTACTTACTTGGAGAGACATATGTCTGAATTTATGGAGTGCAATTTAAATGAACT
AGTTAAACATGGTCTGCGTGCCTTAAGAGAGACACTTCCTGCAGAACAGGACCTGACTACAAAGAATGTTTCCATTGGAA
TTGTTGGTAAAGACTTGGAGTTTACAATCTATGATGATGATGATGTGTCTCCATTCCTGGAAGGTCTTGAAGAAAGACCA
CAGAGAAAGGCACAGCCTGCTCAACCTGCTGATGAACCTGCAGAAAAGGCTGATGAACCAATGGAACATTAA

Library Parental gene expression (RPM)
SRP007412_brain_prefrontal_cortex 34 .22 RPM
SRP007412_cerebellum 31 .74 RPM
SRP007412_heart 26 .40 RPM
SRP007412_kidney 31 .56 RPM
SRP007412_liver 38 .31 RPM



Species Parental gene accession Homology type Retrogenes number
Ailuropoda melanoleuca ENSAMEG00000002440 ortholog_one2one 2 retrogenes
retro_amel_1733, retro_amel_1903,
Bos taurus ENSBTAG00000006564 ortholog_one2one 1 retrogene
retro_btau_1833,
Choloepus hoffmanni ENSCHOG00000005395 ortholog_one2one 11 retrogenes
retro_chof_155, retro_chof_1844, retro_chof_1991, retro_chof_2376, retro_chof_2626, retro_chof_267, retro_chof_2712, retro_chof_459, retro_chof_519, retro_chof_719, retro_chof_77,
Equus caballus ENSECAG00000024086 ortholog_one2one 1 retrogene
retro_ecab_1078,
Felis catus ENSFCAG00000011381 ortholog_one2one 1 retrogene
retro_fcat_972,
Homo sapiens ENSG00000129084 ortholog_one2one 1 retrogene
retro_hsap_4720,
Gorilla gorilla ENSGGOG00000001416 ortholog_one2one 1 retrogene
retro_ggor_2933,
Macropus eugenii ENSMEUG00000011112 ortholog_one2one 1 retrogene
retro_meug_71,
Myotis lucifugus ENSMLUG00000009251 ortholog_one2one 4 retrogenes
retro_mluc_2444, retro_mluc_2445, retro_mluc_2463, retro_mluc_2515,
Macaca mulatta ENSMMUG00000016446 ortholog_one2one 1 retrogene
retro_mmul_2509,
Mustela putorius furo ENSMPUG00000013199 ortholog_one2one 4 retrogenes
retro_mputfur_1243, retro_mputfur_224, retro_mputfur_338, retro_mputfur_825,
Mus musculus ENSMUSG00000030751 ortholog_one2one 1 retrogene
retro_mmus_831,
Oryctolagus cuniculus ENSOCUG00000000439 ortholog_one2one 2 retrogenes
retro_ocun_1461, retro_ocun_1490,
Otolemur garnettii ENSOGAG00000011622 ortholog_one2one 3 retrogenes
retro_ogar_2267, retro_ogar_2644, retro_ogar_992,
Ochotona princeps ENSOPRG00000013677 ortholog_one2one 1 retrogene
retro_opri_370,
Pan troglodytes ENSPTRG00000003385 ortholog_one2one 1 retrogene
retro_ptro_3137,
Sarcophilus harrisii ENSSHAG00000015626 ortholog_one2one 1 retrogene
retro_shar_217,
Ictidomys tridecemlineatus ENSSTOG00000006270 ortholog_one2one 2 retrogenes
retro_itri_1470, retro_itri_987,
Tupaia belangeri ENSTBEG00000012037 ortholog_one2one 3 retrogenes
retro_tbel_2629, retro_tbel_323, retro_tbel_982,
Tarsius syrichta ENSTSYG00000003869 ortholog_one2one 2 retrogenes
retro_tsyr_1723, retro_tsyr_374,
Vicugna pacos ENSVPAG00000008820 ortholog_one2one 3 retrogenes
retro_vpac_344, retro_vpac_648, retro_vpac_82,

# RetrogeneDB ID Identity (%) Coverage (%) ORF conservation Expression evidence RDV
1. retro_pabe_1883 96.58 99.62
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2. retro_pabe_3664 85.97 82.89
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Download FASTA sequences of all ENSPPYG00000003466 retrocopies