RetrogeneDB ID: | retro_tsyr_1723 | ||
Retrocopylocation | Organism: | Tarsier (Tarsius syrichta) | |
Coordinates: | scaffold_558828:232..709(+) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | PSMA1 | ||
Ensembl ID: | ENSTSYG00000003869 | ||
Aliases: | None | ||
Description: | proteasome (prosome, macropain) subunit, alpha type, 1 [Source:HGNC Symbol;Acc:9530] |
Percent Identity: | 64.02 % |
Parental protein coverage: | 62.6 % |
Number of stop codons detected: | 2 |
Number of frameshifts detected | 0 |
Parental | RIHQIEYAMEAVKQGSATVGLKSKTHAVLVALKRAQSELAAHQKKILHVDNHIGISIAGLTADARLLCNF |
R.HQI.YA..AVKQGSATVGLK.KT..VL.ALKRAQSELAA....ILH.DN.IG.SIA.LTADA.LL.NF | |
Retrocopy | RLHQI*YAVKAVKQGSATVGLKLKTYVVLDALKRAQSELAAQKETILHADNYIGMSIAELTADAGLLHNF |
Parental | MRQECLDSRFVFDRPLPVSRLVSLIGSKTQIPTQRYGRRPYGVGLLIAGYDDMGPHIFQTCPSANYFDCR |
..QE.LDSRF.FDR.L.V.....LIG.K.Q..T..YG.R.YGVGLLI.GYD..GPHI....P....F.CR | |
Retrocopy | VHQEYLDSRFLFDRSLSV---FLLIGTKIQMLTKQYGHRLYGVGLLIVGYDYLGPHISK--PDHLLFYCR |
Parental | AMSIGARSQSARTYLERHMSELLE |
.MSIGA.S..A...LERH.SE..E | |
Retrocopy | VMSIGACS*LACIHLERHLSEFME |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |