RetrogeneDB ID: | retro_cpor_1224 | ||
Retrocopylocation | Organism: | Guinea Pig (Cavia porcellus) | |
Coordinates: | scaffold_59:442302..442745(-) | ||
Located in intron of: | ENSCPOG00000020088 | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | CHP1 | ||
Ensembl ID: | ENSCPOG00000010577 | ||
Aliases: | None | ||
Description: | None |
Percent Identity: | 61.07 % |
Parental protein coverage: | 75.9 % |
Number of stop codons detected: | 2 |
Number of frameshifts detected | 1 |
Parental | LSREDFQRIPELAINPLGDRIINAFFPEGEDQVNFRGFMRTLAHFRPIEDNEKSKDVNGPEPLNS-RSNK |
LS.E..Q..PELAIN.LGD.II..FF..G.DQVN..GF...LAHF.PI....K.KDVNG.EPLNS..... | |
Retrocopy | LSWENLQWLPELAINSLGDQIISVFFLDGKDQVNSYGFTTILAHF*PIDSDTKNKDVNGSEPLNS<LDQH |
Parental | LHFAFRLYDLDKDDKISRDELLQVLRMMVGVNISDEQLGSIADRTIQEADQDGDSAISFTEFVKVLEKVD |
LHFAF.LY..DKD.KI...ELL.VLRMMV.V..S.EQLG...DR.I.E.DQ.GD...S...FVKV.EKV. | |
Retrocopy | LHFAFQLYRVDKDGKIPHSELLAVLRMMVRVTVSGEQLGIVTDRVIWEVDQHGDGTVSVK*FVKVMEKVN |
Parental | VEQKMSIRF |
.EQKMS.RF | |
Retrocopy | IEQKMSTRF |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP017611_brain | 0 .00 RPM | 47 .57 RPM |
SRP017611_kidney | 0 .00 RPM | 54 .12 RPM |
SRP017611_liver | 0 .00 RPM | 66 .16 RPM |
SRP040447_lung | 0 .00 RPM | 23 .91 RPM |
SRP040447_skeletal_muscle | 0 .00 RPM | 14 .95 RPM |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Canis familiaris | ENSCAFG00000009525 | 1 retrocopy | |
Cavia porcellus | ENSCPOG00000010577 | 2 retrocopies |
retro_cpor_1224 , retro_cpor_726,
|
Homo sapiens | ENSG00000187446 | 2 retrocopies | |
Gorilla gorilla | ENSGGOG00000007312 | 2 retrocopies | |
Macaca mulatta | ENSMMUG00000017092 | 2 retrocopies | |
Mus musculus | ENSMUSG00000014077 | 4 retrocopies | |
Nomascus leucogenys | ENSNLEG00000003465 | 4 retrocopies | |
Procavia capensis | ENSPCAG00000005419 | 1 retrocopy | |
Pongo abelii | ENSPPYG00000006370 | 2 retrocopies | |
Pan troglodytes | ENSPTRG00000006942 | 2 retrocopies | |
Rattus norvegicus | ENSRNOG00000004742 | 2 retrocopies | |
Ictidomys tridecemlineatus | ENSSTOG00000014503 | 1 retrocopy |