Parental gene:

CHP1, ENSPTRG00000006942

Aliases:None
Description:calcineurin-like EF-hand protein 1 [Source:HGNC Symbol;Acc:17433]
Organism:Chimpanzee (Pan troglodytes)
Coordinates:15:38139914..38185174(+)


>ENSPTRG00000006942
ATGGGTTCTCGGGCCTCCACGTTACTGCGGGACGAAGAGCTCGAGGAGATCAAGAAGGAGACCGGCTTTTCCCACAGTCA
AATCACTCGCCTCTACAGCCGGTTCACCAGCCTGGACAAAGGAGAGAATGGGACTCTCAGCCGGGAAGATTTCCAGAGGA
TTCCAGAACTTGCCATCAACCCACTGGGGGACCGGATCATCAATGCCTTCTTTCCAGAGGGAGAGGACCAGGTAAACTTC
CGTGGATTCATGCGAACTTTGGCTCATTTCCGCCCCATTGAGGATAATGAAAAGAGCAAAGATGTGAATGGACCCGAACC
ACTCAACAGCCGAAGCAACAAACTGCACTTTGCTTTTCGACTATATGATTTGGATAAAGATGAAAAGATCTCCCGTGATG
AGCTGTTACAGGTGCTACGCATGATGGTCGGAGTAAATATCTCAGATGAGCAGCTGGGCAGCATCGCAGACAGGACCATT
CAGGAGGCTGATCAGGATGGGGACAGTGCCATATCTTTCACAGAATTTGTTAAGGTTTTGGAGAAGGTGGATGTAGAACA
GAAAATGAGCATCCGATTTCTTCACTAA

Library Parental gene expression (RPM)
SRP007412_brain_prefrontal_cortex 119 .15 RPM
SRP007412_cerebellum 74 .35 RPM
SRP007412_heart 49 .81 RPM
SRP007412_kidney 157 .04 RPM
SRP007412_liver 228 .39 RPM
SRP007412_testis 17 .81 RPM



Species Parental gene accession Homology type Retrogenes number
Canis familiaris ENSCAFG00000009525 ortholog_one2one 1 retrogene
retro_cfam_2136,
Cavia porcellus ENSCPOG00000010577 ortholog_one2one 2 retrogenes
retro_cpor_1224, retro_cpor_726,
Homo sapiens ENSG00000187446 ortholog_one2one 2 retrogenes
retro_hsap_3334, retro_hsap_3541,
Gorilla gorilla ENSGGOG00000007312 ortholog_one2one 2 retrogenes
retro_ggor_1293, retro_ggor_2392,
Macaca mulatta ENSMMUG00000017092 ortholog_one2one 2 retrogenes
retro_mmul_1809, retro_mmul_2088,
Mus musculus ENSMUSG00000014077 ortholog_one2one 4 retrogenes
retro_mmus_1458, retro_mmus_2094, retro_mmus_3133, retro_mmus_3469,
Nomascus leucogenys ENSNLEG00000003465 ortholog_one2one 4 retrogenes
retro_nleu_1678, retro_nleu_2269, retro_nleu_2608, retro_nleu_2609,
Procavia capensis ENSPCAG00000005419 ortholog_one2one 1 retrogene
retro_pcap_240,
Pongo abelii ENSPPYG00000006370 ortholog_one2one 2 retrogenes
retro_pabe_2749, retro_pabe_2925,
Pan troglodytes ENSPTRG00000041941 within_species_paralog 1 retrogene
retro_ptro_2909,
Rattus norvegicus ENSRNOG00000004742 ortholog_one2one 2 retrogenes
retro_rnor_2034, retro_rnor_2223,
Ictidomys tridecemlineatus ENSSTOG00000014503 ortholog_one2one 1 retrogene
retro_itri_227,

# RetrogeneDB ID Identity (%) Coverage (%) ORF conservation Expression evidence RDV
1. retro_ptro_2144 84.77 100.00
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2. retro_ptro_2407 83.59 65.64
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Download FASTA sequences of all ENSPTRG00000006942 retrocopies