RetrogeneDB ID: | retro_cpor_1259 | ||
Retrocopylocation | Organism: | Guinea Pig (Cavia porcellus) | |
Coordinates: | scaffold_60:583382..583817(+) | ||
Located in intron of: | ENSCPOG00000009348 | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | RPL5 | ||
Ensembl ID: | ENSCPOG00000000698 | ||
Aliases: | None | ||
Description: | None |
Percent Identity: | 73.47 % |
Parental protein coverage: | 50.34 % |
Number of stop codons detected: | 1 |
Number of frameshifts detected | 0 |
Parental | YAHELPKYGVKVGLTNYAAAYCTGLLLARRLLNRFGMDKIYEGQVEVTGDEYNVESIDGKPGAFTCYLDA |
..H......V..GL..Y.AAYCTGLLLARRLLN.F.MDK.YEGQV.VTG.EYNVESID.K.GAFTCYLD. | |
Retrocopy | HMHMNYQISVQAGLAKYSAAYCTGLLLARRLLNKFSMDKSYEGQVKVTGAEYNVESIDRKSGAFTCYLDT |
Parental | GLARTTTGNKVFGALKGAVDGGLSIPHSTKRFPGYDSESKEFNAEVHRKHIMGQNVADYMRYLMEEDEDA |
GLARTT.GNK.FGA.K.A.DG.LS.PHST...P.YDSESKEF.AE.H.K.IMGQNV..YMRYLMEE.EDA | |
Retrocopy | GLARTTNGNKIFGAQKDALDGVLSVPHSTT*VPAYDSESKEFSAEEHQKRIMGQNV-NYMRYLMEE-EDA |
Parental | YKKQFSQ |
YKKQFSQ | |
Retrocopy | YKKQFSQ |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP017611_brain | 0 .17 RPM | 227 .19 RPM |
SRP017611_kidney | 0 .00 RPM | 364 .84 RPM |
SRP017611_liver | 0 .13 RPM | 197 .35 RPM |
SRP040447_lung | 0 .05 RPM | 287 .27 RPM |
SRP040447_skeletal_muscle | 0 .08 RPM | 318 .57 RPM |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Ailuropoda melanoleuca | ENSAMEG00000009878 | 5 retrocopies | |
Bos taurus | ENSBTAG00000002026 | 2 retrocopies | |
Cavia porcellus | ENSCPOG00000000698 | 8 retrocopies |
retro_cpor_1047, retro_cpor_1097, retro_cpor_1141, retro_cpor_1259 , retro_cpor_1354, retro_cpor_1387, retro_cpor_428, retro_cpor_737,
|
Equus caballus | ENSECAG00000021065 | 1 retrocopy | |
Macropus eugenii | ENSMEUG00000006361 | 3 retrocopies | |
Monodelphis domestica | ENSMODG00000011635 | 1 retrocopy | |
Mustela putorius furo | ENSMPUG00000004150 | 6 retrocopies | |
Ornithorhynchus anatinus | ENSOANG00000004669 | 1 retrocopy | |
Oryctolagus cuniculus | ENSOCUG00000010089 | 2 retrocopies | |
Petromyzon marinus | ENSPMAG00000002040 | 1 retrocopy | |
Pteropus vampyrus | ENSPVAG00000015117 | 4 retrocopies | |
Rattus norvegicus | ENSRNOG00000023529 | 6 retrocopies | |
Sarcophilus harrisii | ENSSHAG00000006417 | 1 retrocopy | |
Sus scrofa | ENSSSCG00000006899 | 2 retrocopies | |
Tupaia belangeri | ENSTBEG00000010560 | 5 retrocopies | |
Tursiops truncatus | ENSTTRG00000013097 | 5 retrocopies |