Parental gene:

ENSSSCG00000006899

Aliases:None
Description:Sus scrofa ribosomal protein L5 (RPL5), mRNA. [Source:RefSeq mRNA;Acc:NM_001114284]
Organism:Pig (Sus scrofa)
Coordinates:4:135982736..135990562(-)


>ENSSSCG00000006899
ATGGGGTTTGTAAAAGTCGTCAAGAATAAGGCTTACTTCAAGAGGTACCAGGTGAAATTTAGAAGACGACGAGAGGGTAA
AACTGACTACTATGCCCGGAAACGATTGGTCATCCAAGATAAAAATAAGTATAACACACCAAAATACAGGATGATAGTTC
GTGTAACCAACAGAGATATAATTTGTCAGATTGCTTATGCCCGTATAGAAGGAGATATGATAGTTTGTGCAGCTTATGCT
CACGAACTCCCAAAGTATGGCGTGAAGGTCGGCCTGACAAATTATGCTGCAGCTTATTGTACTGGCCTGCTGCTGGCCCG
CAGGCTTCTTAATAGGTTTGGTATGGACAAGATTTACGAAGGCCAGGTCGAGGTGACTGGAGATGAATACAATGTGGAAA
GCATCGACGGTCAGCCTGGTGCCTTCACCTGTTACCTGGATGCAGGGCTTGCCAGGACGACTACTGGAAACAAAGTTTTT
GGGGCCCTGAAGGGAGCCGTAGATGGAGGCCTGTCTATCCCTCACAGCACCAAACGATTCCCTGGTTATGATTCAGAAAG
CAAAGAATTCAATGCTGAAGTGCACCGAAAGCACATCCTGGGGCAGAATGTTGCAGATTATATGCGTTACCTGATTGAAG
AAGATGAGGATGCTTACAAGAAACAGTTCTCTCAGTACATAAAGAACAACGTGACTCCAGACATGATGGAGGAAATGTAT
AAGAAAGCTCATGCTGCGATACGAGAGAATCCAGTGTATGAGAAGAAGCCTAAGAAAGAAGTTAAAAAGAAGAGGTGGAA
TCGTCCCAAAATGTCACTTGCCCAGAAGAAAGATCGGGTTGCTCAGAAGAAAGCAAGCTTCCTTCGAGCTCAGGAACGGG
CTGCTGAGAGCTAA

Library Parental gene expression (RPM)
SRP014902_placenta 540 .88 RPM
SRP014902_testis 1152 .79 RPM
SRP018288_heart 774 .07 RPM
SRP018288_kidney 642 .85 RPM
SRP018288_liver 568 .16 RPM
SRP018288_lung 913 .38 RPM
SRP018856_adipose 2066 .13 RPM
SRP035408_brain 944 .40 RPM
SRP035408_liver 942 .58 RPM



Species Parental gene accession Homology type Retrogenes number
Ailuropoda melanoleuca ENSAMEG00000009878 ortholog_one2one 5 retrogenes
retro_amel_1200, retro_amel_137, retro_amel_139, retro_amel_1439, retro_amel_1669,
Bos taurus ENSBTAG00000002026 ortholog_one2many 2 retrogenes
retro_btau_120, retro_btau_67,
Cavia porcellus ENSCPOG00000000698 ortholog_one2one 8 retrogenes
retro_cpor_1047, retro_cpor_1097, retro_cpor_1141, retro_cpor_1259, retro_cpor_1354, retro_cpor_1387, retro_cpor_428, retro_cpor_737,
Dipodomys ordii ENSDORG00000005674 ortholog_one2one 2 retrogenes
retro_dord_226, retro_dord_670,
Equus caballus ENSECAG00000021065 ortholog_one2one 1 retrogene
retro_ecab_654,
Macropus eugenii ENSMEUG00000006361 ortholog_one2many 3 retrogenes
retro_meug_1168, retro_meug_1537, retro_meug_2146,
Monodelphis domestica ENSMODG00000011635 ortholog_one2many 1 retrogene
retro_mdom_748,
Mustela putorius furo ENSMPUG00000004150 ortholog_one2one 6 retrogenes
retro_mputfur_213, retro_mputfur_449, retro_mputfur_451, retro_mputfur_597, retro_mputfur_721, retro_mputfur_833,
Mus musculus ENSMUSG00000058558 ortholog_one2one 11 retrogenes
retro_mmus_1000, retro_mmus_1185, retro_mmus_1338, retro_mmus_1789, retro_mmus_1991, retro_mmus_2577, retro_mmus_2846, retro_mmus_297, retro_mmus_3076, retro_mmus_504, retro_mmus_911,
Ornithorhynchus anatinus ENSOANG00000004669 ortholog_many2many 1 retrogene
retro_oana_97,
Oryctolagus cuniculus ENSOCUG00000010089 ortholog_one2many 2 retrogenes
retro_ocun_265, retro_ocun_54,
Petromyzon marinus ENSPMAG00000002040 ortholog_one2many 1 retrogene
retro_pmar_23,
Pteropus vampyrus ENSPVAG00000015117 ortholog_one2one 4 retrogenes
retro_pvam_1427, retro_pvam_355, retro_pvam_505, retro_pvam_527,
Rattus norvegicus ENSRNOG00000023529 ortholog_one2many 6 retrogenes
retro_rnor_113, retro_rnor_2246, retro_rnor_2418, retro_rnor_2498, retro_rnor_2802, retro_rnor_2922,
Sarcophilus harrisii ENSSHAG00000006417 ortholog_one2many 1 retrogene
retro_shar_202,
Tupaia belangeri ENSTBEG00000010560 ortholog_one2one 5 retrogenes
retro_tbel_101, retro_tbel_1054, retro_tbel_1518, retro_tbel_3006, retro_tbel_3530,
Tursiops truncatus ENSTTRG00000013097 ortholog_one2one 5 retrogenes
retro_ttru_1446, retro_ttru_1548, retro_ttru_1796, retro_ttru_645, retro_ttru_979,

# RetrogeneDB ID Identity (%) Coverage (%) ORF conservation Expression evidence RDV
1. retro_sscr_149 76.49 88.89
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2. retro_sscr_219 55.77 51.85
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Download FASTA sequences of all ENSSSCG00000006899 retrocopies