Parental gene:

RPL5, ENSTTRG00000013097

Aliases:None
Description:ribosomal protein L5 [Source:HGNC Symbol;Acc:10360]
Organism:Dolphin (Tursiops truncatus)
Coordinates:scaffold_111114:214704..222508(-)


>ENSTTRG00000013097
ATGGGGTTTGTTAAAGTTGTCAAGAATAAGGCCTACTTCAAGAGATACCAAGTGAAAAGAAGACGGCGAGAGGGCAAAAC
TGACTACTATGCTCGGAAACGATTGGTAATTCAAGATAAAAATAAGTACAACACACCCAAATACAGAATGATAGTTCGTG
TAACTAACAGAGATATCATTTGTCAGATTGCTTATGCCCGTATAGAAGGAGATATGATAGTTTGTGCAGCTTATGCTCAT
GAACTCCCGAAGTATGGTGTGAAGGTGGGCCTGACAAATTATGCTGCAGCATATTGTACTGGCCTGCTGCTGGCACGCAG
GCTTCTTAATAGGTTTGGTATGGACAAAATTTATGAAGGCCAAGTCGAGGTGACTGGAGATGAATACAATGTTGAAAGCA
TTGATGGTCAACCTGGTGCCTTCACCTGTTACTTGGATGCAGGGCTTGCCAGGACTACTACTGGGAATAAAGTTTTTGGG
GCCCTGAAGGGAGCTGTCGATGGAGGCTTGTCTATCCCTCACAGTACCAAACGGTTCCCTGGTTATGATTCAGAAAGCAA
AGAATTCAATGCTGAGGTACACCGAAAGCACATCATGGGGCAGAACGTTGCAGATTATATGCGTTACCTGATTGAAGAAG
ATGAAGATGCTTACAAGAAACAATTCTCTCAATACATAAAGAACAACGTAACTCCAGACATGATGGAGGAGATGTATAAG
AAGGCTCATGCTGCAATACGAGAGAATCCAGTGTATGAGAAGAAGCCTAAGAAAGAAGTTAAAAAGAAGAGGTGGAACCG
TCCCAAAATGTCACTTGCCCAGAAGAAAGATCGGGTAGCTCAGAAGAAGGCAAGCTTCCTTAGAGCTCAGGAACGGGCTG
CTGAGAGTTAA

Species Parental gene accession Homology type Retrogenes number
Ailuropoda melanoleuca ENSAMEG00000009878 ortholog_one2one 5 retrogenes
retro_amel_1200, retro_amel_137, retro_amel_139, retro_amel_1439, retro_amel_1669,
Bos taurus ENSBTAG00000002026 ortholog_one2many 2 retrogenes
retro_btau_120, retro_btau_67,
Cavia porcellus ENSCPOG00000000698 ortholog_one2one 8 retrogenes
retro_cpor_1047, retro_cpor_1097, retro_cpor_1141, retro_cpor_1259, retro_cpor_1354, retro_cpor_1387, retro_cpor_428, retro_cpor_737,
Dipodomys ordii ENSDORG00000005674 ortholog_one2one 2 retrogenes
retro_dord_226, retro_dord_670,
Equus caballus ENSECAG00000021065 ortholog_one2one 1 retrogene
retro_ecab_654,
Macropus eugenii ENSMEUG00000006361 ortholog_one2one 3 retrogenes
retro_meug_1168, retro_meug_1537, retro_meug_2146,
Monodelphis domestica ENSMODG00000011635 ortholog_one2one 1 retrogene
retro_mdom_748,
Mustela putorius furo ENSMPUG00000004150 ortholog_one2one 6 retrogenes
retro_mputfur_213, retro_mputfur_449, retro_mputfur_451, retro_mputfur_597, retro_mputfur_721, retro_mputfur_833,
Mus musculus ENSMUSG00000058558 ortholog_one2one 11 retrogenes
retro_mmus_1000, retro_mmus_1185, retro_mmus_1338, retro_mmus_1789, retro_mmus_1991, retro_mmus_2577, retro_mmus_2846, retro_mmus_297, retro_mmus_3076, retro_mmus_504, retro_mmus_911,
Ornithorhynchus anatinus ENSOANG00000004669 ortholog_one2many 1 retrogene
retro_oana_97,
Oryctolagus cuniculus ENSOCUG00000010089 ortholog_one2many 2 retrogenes
retro_ocun_265, retro_ocun_54,
Petromyzon marinus ENSPMAG00000002040 ortholog_one2one 1 retrogene
retro_pmar_23,
Pteropus vampyrus ENSPVAG00000015117 ortholog_one2one 4 retrogenes
retro_pvam_1427, retro_pvam_355, retro_pvam_505, retro_pvam_527,
Rattus norvegicus ENSRNOG00000023529 ortholog_one2many 6 retrogenes
retro_rnor_113, retro_rnor_2246, retro_rnor_2418, retro_rnor_2498, retro_rnor_2802, retro_rnor_2922,
Sarcophilus harrisii ENSSHAG00000006417 ortholog_one2one 1 retrogene
retro_shar_202,
Sus scrofa ENSSSCG00000006899 ortholog_one2one 2 retrogenes
retro_sscr_149, retro_sscr_219,
Tupaia belangeri ENSTBEG00000010560 ortholog_one2one 5 retrogenes
retro_tbel_101, retro_tbel_1054, retro_tbel_1518, retro_tbel_3006, retro_tbel_3530,

# RetrogeneDB ID Identity (%) Coverage (%) ORF conservation Expression evidence RDV
1. retro_ttru_645 81.88 100.00
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2. retro_ttru_979 67.25 56.76
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3. retro_ttru_1446 63.53 56.76
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4. retro_ttru_1548 82.27 68.58
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5. retro_ttru_1796 84.42 78.04
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Download FASTA sequences of all ENSTTRG00000013097 retrocopies