Parental gene:

RPL5, ENSCPOG00000000698

Aliases:None
Description:None
Organism:Guinea Pig (Cavia porcellus)
Coordinates:scaffold_2:18646767..18655106(+)


>ENSCPOG00000000698
AAGGGTTTTGTTAAAGTTGTCAAGAATAAGGCCTACTTTAAGAGATACCAAGTGAAGTTTAGAAGAAGACGAGGTATGGA
GAGGAAACGCTTGGTGATCCAAGACAAAAATAAGTACAACACACCTAAATACAGGATGATAGTTCGTGTAACTAACAGAG
ATATCATTTGTCAGATTGCTTATGCCCGTATTGAAGGGGATATGATAGTCTGTGCAGCATATGCACATGAACTACCAAAG
TATGGTGTGAAAGTTGGCCTAACAAATTATGCTGCAGCATACTGTACTGGCCTGCTGCTGGCCCGCAGGCTTCTCAATAG
GTTTGGCATGGATAAGATCTATGAAGGCCAGGTGGAGGTGACTGGAGATGAATACAATGTGGAAAGCATTGATGGTAAAC
CTGGTGCCTTCACCTGCTATTTGGATGCAGGCCTTGCCAGAACTACAACTGGCAATAAAGTTTTTGGAGCTCTCAAGGGT
GCTGTGGATGGAGGTTTGTCTATCCCTCACAGTACCAAACGATTCCCTGGTTATGATTCGGAAAGTAAGGAGTTCAATGC
AGAAGTACATCGGAAGCACATCATGGGTCAGAATGTTGCAGATTATATGCGTTACCTGATGGAAGAAGATGAAGATGCTT
ACAAGAAACAGTTCTCTCAGTACATAAAGAACAATGTAACTCCAGATATGATGGAGGAGATGTATAAGAAAGCTCATGCT
GCTATACGAGAGAATCCAGTCTATAAAAAGAAGCCGAAGAGAGAAGTTAAAAAGAAGAGGTGGAACCGTCCCAAAATGTC
ACTTGCCCAGAAGAAAGATCGGGTAGCTCAAAAGAAAGCAAGCTTCCTCAGAGCTCAGGAACGGGCTGCGGAGAGTTAA

Library Parental gene expression (RPM)
SRP017611_brain 227 .19 RPM
SRP017611_kidney 364 .84 RPM
SRP017611_liver 197 .35 RPM
SRP040447_lung 287 .27 RPM
SRP040447_skeletal_muscle 318 .57 RPM



Species Parental gene accession Homology type Retrogenes number
Ailuropoda melanoleuca ENSAMEG00000009878 ortholog_one2one 5 retrogenes
retro_amel_1200, retro_amel_137, retro_amel_139, retro_amel_1439, retro_amel_1669,
Bos taurus ENSBTAG00000002026 ortholog_one2many 2 retrogenes
retro_btau_120, retro_btau_67,
Equus caballus ENSECAG00000021065 ortholog_one2one 1 retrogene
retro_ecab_654,
Macropus eugenii ENSMEUG00000006361 ortholog_one2many 3 retrogenes
retro_meug_1168, retro_meug_1537, retro_meug_2146,
Monodelphis domestica ENSMODG00000011635 ortholog_one2many 1 retrogene
retro_mdom_748,
Mustela putorius furo ENSMPUG00000004150 ortholog_one2one 6 retrogenes
retro_mputfur_213, retro_mputfur_449, retro_mputfur_451, retro_mputfur_597, retro_mputfur_721, retro_mputfur_833,
Ornithorhynchus anatinus ENSOANG00000004669 ortholog_many2many 1 retrogene
retro_oana_97,
Oryctolagus cuniculus ENSOCUG00000010089 possible_ortholog 2 retrogenes
retro_ocun_265, retro_ocun_54,
Petromyzon marinus ENSPMAG00000002040 ortholog_one2many 1 retrogene
retro_pmar_23,
Pteropus vampyrus ENSPVAG00000015117 ortholog_one2one 4 retrogenes
retro_pvam_1427, retro_pvam_355, retro_pvam_505, retro_pvam_527,
Rattus norvegicus ENSRNOG00000023529 possible_ortholog 6 retrogenes
retro_rnor_113, retro_rnor_2246, retro_rnor_2418, retro_rnor_2498, retro_rnor_2802, retro_rnor_2922,
Sarcophilus harrisii ENSSHAG00000006417 ortholog_one2many 1 retrogene
retro_shar_202,
Sus scrofa ENSSSCG00000006899 ortholog_one2one 2 retrogenes
retro_sscr_149, retro_sscr_219,
Tupaia belangeri ENSTBEG00000010560 ortholog_one2one 5 retrogenes
retro_tbel_101, retro_tbel_1054, retro_tbel_1518, retro_tbel_3006, retro_tbel_3530,
Tursiops truncatus ENSTTRG00000013097 ortholog_one2one 5 retrogenes
retro_ttru_1446, retro_ttru_1548, retro_ttru_1796, retro_ttru_645, retro_ttru_979,

# RetrogeneDB ID Identity (%) Coverage (%) ORF conservation Expression evidence RDV
1. retro_cpor_428 54.82 76.71
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2. retro_cpor_737 57.69 53.08
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3. retro_cpor_1047 72.00 92.81
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4. retro_cpor_1097 78.81 90.75
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5. retro_cpor_1141 71.78 54.45
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6. retro_cpor_1259 73.47 50.34
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7. retro_cpor_1354 63.54 60.96
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8. retro_cpor_1387 78.21 53.08
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Download FASTA sequences of all ENSCPOG00000000698 retrocopies