RetrogeneDB ID: | retro_meug_1537 | ||
Retrocopylocation | Organism: | Wallaby (Macropus eugenii) | |
Coordinates: | Scaffold44243:743..1447(-) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | RPL5 | ||
Ensembl ID: | ENSMEUG00000006361 | ||
Aliases: | None | ||
Description: | ribosomal protein L5 [Source:HGNC Symbol;Acc:10360] |
Percent Identity: | 86.02 % |
Parental protein coverage: | 79.12 % |
Number of stop codons detected: | 1 |
Number of frameshifts detected | 1 |
Parental | MGFVKVVKNKAYFKRYQVKFRRRREGKTDYYARKRLVIQDKNKYNTPKYRMIVRVTNRDIICQIAYARIE |
MGFVKVVKNK.YFKRYQVKF.RR.EGKTDYYARK.LVIQ.KNKYNTPK...IVRV..RD.ICQIA..R.E | |
Retrocopy | MGFVKVVKNKTYFKRYQVKFQRRQEGKTDYYARKHLVIQGKNKYNTPKHKLIVRVASRDTICQIAHVRME |
Parental | GDMIVCAAYAHELPKYGVKVGLTNYAAAYCTGLLLARRLLNRFGMDKIYEGQVEVTGDEYNVESIDGQPG |
GDM.V.AAYAHELPKYGVKVGLT.YAA.YCTGLLLARRLLNR.G.DKI.EGQVEV.GDEYN.ESIDGQP. | |
Retrocopy | GDMTVRAAYAHELPKYGVKVGLTSYAAVYCTGLLLARRLLNRSGTDKIDEGQVEVAGDEYNGESIDGQPD |
Parental | AFTCYLDARLARTT-TGNKVFGALTGAVDGGLSIPHSTKRFPGYDSESKEFNAEVHRKHIMGQNVADYMR |
AFTCYLD..LARTT..GNKVFGAL.GAVDGGLSIPHSTKRFPGYDSESKEFNAEVH.KHIMGQNVADYM. | |
Retrocopy | AFTCYLDTGLARTT<LGNKVFGALKGAVDGGLSIPHSTKRFPGYDSESKEFNAEVHCKHIMGQNVADYM* |
Parental | YLMEEDEDAYKKQFSQYIKNNITPDM |
YLMEEDEDA.KKQFSQYIKN.ITPDM | |
Retrocopy | YLMEEDEDACKKQFSQYIKNSITPDM |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |