RetrogeneDB ID: | retro_cpor_348 | ||
Retrocopylocation | Organism: | Guinea Pig (Cavia porcellus) | |
Coordinates: | scaffold_13:16975862..16976942(-) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | EEF1A1 | ||
Ensembl ID: | ENSCPOG00000004067 | ||
Aliases: | None | ||
Description: | Elongation factor 1-alpha [Source:UniProtKB/TrEMBL;Acc:H0V2B3] |
Percent Identity: | 96.67 % |
Parental protein coverage: | 77.92 % |
Number of stop codons detected: | 0 |
Number of frameshifts detected | 0 |
Parental | MGKEKTHINIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAAEMGKGSFKYAWVLDKLKAERERG |
MGKEKTHINI.V.GHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAAEMGKGSFKYAWVLDKLKAERERG | |
Retrocopy | MGKEKTHINIFVTGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAAEMGKGSFKYAWVLDKLKAERERG |
Parental | ITIDISLWKFETSKYYVTIIDAPGHRDFIKNMITGTSQADCAVLIVAAGVGEFEAGISKNGQTREHALLA |
ITIDISLWKFETSKYYVTIIDAPGHRDFIKNMITGTSQADCAVLIVAAGVGEFEAG.SKNGQTREHALLA | |
Retrocopy | ITIDISLWKFETSKYYVTIIDAPGHRDFIKNMITGTSQADCAVLIVAAGVGEFEAGTSKNGQTREHALLA |
Parental | YTLGVKQLIVGVNKMDSTEPPYSQKRYEEIVKEVSTYIKKIGYNPDTVAFVPISGWNGDNMLEPSANMPW |
YTLGVKQLIVGVNKMDSTEPPYSQKRYEEIVKEVSTYIKKIGYNPDTVAFVPISGWNGDNMLEPSANMPW | |
Retrocopy | YTLGVKQLIVGVNKMDSTEPPYSQKRYEEIVKEVSTYIKKIGYNPDTVAFVPISGWNGDNMLEPSANMPW |
Parental | FKGWKVTRKDGNASGTTLLEALDCILPPTRPTDKPLRLPLQDVYKIGGIGTVPVGRVETGVLKPGMVVTF |
FKGWKVTRKDGNASGTTLLEALDCILPPT.PTDKPLRLP.QDVYKIGG.GTV.VGR.ETGVLKPGMVVTF | |
Retrocopy | FKGWKVTRKDGNASGTTLLEALDCILPPTHPTDKPLRLPFQDVYKIGGTGTVSVGREETGVLKPGMVVTF |
Parental | APVNVTTEVKSVEMHHEALSEALPGDNVGFNVKNVSVKDVRRGNVAGDSKNDPPMEAAGFTAQVIILNHP |
APVNVTTEVKS.EMHHEAL.EALPGDNVGFNVKNVSVKDVRRGNVAGDSKNDPPMEAAGFT.QV.ILNHP | |
Retrocopy | APVNVTTEVKSLEMHHEALNEALPGDNVGFNVKNVSVKDVRRGNVAGDSKNDPPMEAAGFTVQVMILNHP |
Parental | GQISAGYAPV |
GQISAGYAPV | |
Retrocopy | GQISAGYAPV |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP017611_brain | 0 .92 RPM | 855 .04 RPM |
SRP017611_kidney | 1 .67 RPM | 1991 .99 RPM |
SRP017611_liver | 1 .44 RPM | 1852 .07 RPM |
SRP040447_lung | 1 .46 RPM | 3418 .91 RPM |
SRP040447_skeletal_muscle | 0 .35 RPM | 830 .52 RPM |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Canis familiaris | ENSCAFG00000013249 | 1 retrocopy | |
Callithrix jacchus | ENSCJAG00000010051 | 6 retrocopies | |
Cavia porcellus | ENSCPOG00000004067 | 15 retrocopies | |
Dipodomys ordii | ENSDORG00000009629 | 1 retrocopy | |
Equus caballus | ENSECAG00000022260 | 1 retrocopy | |
Erinaceus europaeus | ENSEEUG00000000342 | 3 retrocopies | |
Loxodonta africana | ENSLAFG00000028081 | 1 retrocopy | |
Macaca mulatta | ENSMMUG00000004852 | 15 retrocopies | |
Monodelphis domestica | ENSMODG00000018533 | 4 retrocopies | |
Mus musculus | ENSMUSG00000037742 | 15 retrocopies | |
Nomascus leucogenys | ENSNLEG00000001476 | 6 retrocopies | |
Pan troglodytes | ENSPTRG00000018347 | 1 retrocopy | |
Ictidomys tridecemlineatus | ENSSTOG00000007687 | 4 retrocopies | |
Vicugna pacos | ENSVPAG00000007637 | 9 retrocopies | |
Drosophila melanogaster | FBgn0000557 | 1 retrocopy |