RetrogeneDB ID: | retro_vpac_592 | ||
Retrocopylocation | Organism: | Alpaca (Vicugna pacos) | |
Coordinates: | scaffold_612:451988..452805(-) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | None | ||
Ensembl ID: | ENSVPAG00000007637 | ||
Aliases: | None | ||
Description: | None |
Percent Identity: | 91.27 % |
Parental protein coverage: | 59.09 % |
Number of stop codons detected: | 1 |
Number of frameshifts detected | 2 |
Parental | EKTHINIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAAEMGKGSFKYAWVLDKLKAERERGITI |
.KTHINIVVIGHVDSGKSTTTGHLIYKCGGI.KRTIEKFEKEA..MGKGSFKY.WVLDKLKAERE.GIT. | |
Retrocopy | KKTHINIVVIGHVDSGKSTTTGHLIYKCGGINKRTIEKFEKEATKMGKGSFKYTWVLDKLKAEREHGITM |
Parental | -DISLWKFETSKYYVTIIDAPGHRDFIKNMITGTSQADCAVLIVAAGVGEFEAGISKNGQTREHALLAYT |
.DISLWKFETSKYYVTIIDAPGHRDFIKNMITGTSQADCAVLIVAAGVGEFEAGISKNGQTREHALLAYT | |
Retrocopy | <DISLWKFETSKYYVTIIDAPGHRDFIKNMITGTSQADCAVLIVAAGVGEFEAGISKNGQTREHALLAYT |
Parental | LGVKQLIVGVNKMDSTEPPYSQKRYEEIVKEVSTYIKKIGYNPDTVAFVPISGWNGDNMLEPSANMP-WF |
LGVKQLI.G.NKMDSTEPPYSQKRYEEIVKEVSTY.KKIGYN.DT.AFVPISGWNGDNMLEPSAN.P.WF | |
Retrocopy | LGVKQLIIGINKMDSTEPPYSQKRYEEIVKEVSTYVKKIGYNLDTIAFVPISGWNGDNMLEPSANTP<WF |
Parental | KGWKVTRKDGNASGTTLLEALDCILPPTRPTDKPLRLPLQDVYKIGGIGTVPVGRVETGVLKPGM |
KGWKVT.KDGNASGT.LLEALDCIL.PT.PTDKPL.LPLQDVYKIGG.GTVPV.RV.TGVL.PGM | |
Retrocopy | KGWKVTHKDGNASGTMLLEALDCILTPTQPTDKPLHLPLQDVYKIGGTGTVPVSRV*TGVLTPGM |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Canis familiaris | ENSCAFG00000013249 | 1 retrocopy | |
Cavia porcellus | ENSCPOG00000004067 | 15 retrocopies | |
Dipodomys ordii | ENSDORG00000009629 | 1 retrocopy | |
Equus caballus | ENSECAG00000022260 | 1 retrocopy | |
Erinaceus europaeus | ENSEEUG00000000342 | 3 retrocopies | |
Loxodonta africana | ENSLAFG00000028081 | 1 retrocopy | |
Monodelphis domestica | ENSMODG00000018533 | 4 retrocopies | |
Mus musculus | ENSMUSG00000037742 | 15 retrocopies | |
Ictidomys tridecemlineatus | ENSSTOG00000007687 | 4 retrocopies | |
Vicugna pacos | ENSVPAG00000007637 | 9 retrocopies |
retro_vpac_369, retro_vpac_404, retro_vpac_510, retro_vpac_511, retro_vpac_523, retro_vpac_544, retro_vpac_582, retro_vpac_592 , retro_vpac_606,
|
Drosophila melanogaster | FBgn0000557 | 1 retrocopy |