Parental gene:

ENSVPAG00000007637

Aliases:None
Description:None
Organism:Alpaca (Vicugna pacos)
Coordinates:scaffold_29432:2374..4544(-)


>ENSVPAG00000007637
ATGGGAAAGGAGAAGACTCACATCAACATCGTGGTCATCGGACACGTAGATTCGGGCAAGTCTACCACCACCGGCCATTT
GATATACAAATGCGGTGGCATCGACAAGAGAACCATCGAAAAGTTCGAGAAGGAGGCTGCTGAGATGGGAAAGGGCTCCT
TCAAGTATGCCTGGGTCTTGGACAAGCTGAAGGCAGAACGTGAGCGTGGTATCACCATTGATATCTCCTTGTGGAAATTC
GAGACTAGCAAGTACTACGTGACCATCATTGATGCCCCAGGACACAGAGACTTTATCAAAAACATGATTACAGGCACATC
TCAGGCTGACTGTGCTGTCCTGATTGTGGCTGCTGGTGTTGGTGAATTTGAAGCAGGTATCTCCAAGAATGGGCAGACCC
GTGAGCATGCCCTTCTGGCTTACACTCTGGGTGTGAAACAGCTAATTGTTGGCGTTAACAAAATGGATTCCACTGAGCCA
CCCTACAGTCAGAAGAGATATGAGGAAATTGTTAAGGAAGTCAGCACCTACATTAAGAAAATTGGCTACAACCCTGACAC
CGTAGCATTTGTGCCAATTTCTGGCTGGAATGGTGACAACATGCTGGAGCCAAGTGCTAACATGCCTTGGTTCAAGGGAT
GGAAAGTCACCCGTAAAGATGGCAATGCCAGTGGAACCACGCTGCTTGAGGCTCTGGATTGCATCCTGCCACCAACTCGG
CCAACTGACAAGCCCTTGCGTCTGCCCCTCCAGGATGTCTACAAGATTGGTGGTATTGGTACTGTCCCTGTGGGTCGAGT
GGAGACTGGTGTTCTCAAACCTGGCATGGTGGTCACCTTTGCTCCAGTCAATGTTACAACTGAAGTCAAGTCCGTTGAGA
TGCACCATGAAGCTTTGAGTGAAGCCCTGCCTGGGGACAACGTGGGCTTCAACGTCAAGAACGTGTCTGTCAAGGATGTT
CGTCGCGGCAATGTGGCTGGTGACAGCAAAAATGATCCACCAATGGAAGCAGCTGGCTTCACAGCTCAGGTGATTATCTT
GAACCATCCAGGCCAGATCAGTGCTGGATATGCACCTGTGCTGGATTGTCACACAGCTCACATTGCTTGCAAGTTTGCTG
AACTGAAGGAGAAGATTGACCGTCGTTCTGGGAAAAAGCTGGAAGATGGCCCCAAGTTCTTGAAATCCGGTGATGCTGCC
ATTGTTGACATGGTTCCTGGCAAGCCCATGTGTGTTGAGAGCTTCTCTGACTATCCTCCTCTGGGCCGTTTTGCTGTCCG
TGACATGAGACAGACGGTTGCTGTGGGTGTCATCAAGGCAGTGGACAAGAAGGCAGCAGGAGCTGGCAAGGTCACCAAGT
CCGCCCAGAAAGCTCAGAAGGCTAAATGA

Species Parental gene accession Homology type Retrogenes number
Canis familiaris ENSCAFG00000013249 possible_ortholog 1 retrogene
retro_cfam_1007,
Cavia porcellus ENSCPOG00000004067 possible_ortholog 15 retrogenes
retro_cpor_1150, retro_cpor_1162, retro_cpor_1191, retro_cpor_1256, retro_cpor_1393, retro_cpor_1492, retro_cpor_1499, retro_cpor_348, retro_cpor_381, retro_cpor_387, retro_cpor_413, retro_cpor_709, retro_cpor_891, retro_cpor_918, retro_cpor_959,
Dipodomys ordii ENSDORG00000009629 possible_ortholog 1 retrogene
retro_dord_509,
Equus caballus ENSECAG00000022260 possible_ortholog 1 retrogene
retro_ecab_802,
Erinaceus europaeus ENSEEUG00000000342 possible_ortholog 3 retrogenes
retro_eeur_407, retro_eeur_492, retro_eeur_625,
Loxodonta africana ENSLAFG00000028081 possible_ortholog 1 retrogene
retro_lafr_651,
Monodelphis domestica ENSMODG00000018533 possible_ortholog 4 retrogenes
retro_mdom_1053, retro_mdom_1146, retro_mdom_311, retro_mdom_792,
Mus musculus ENSMUSG00000037742 possible_ortholog 15 retrogenes
retro_mmus_1349, retro_mmus_1518, retro_mmus_1667, retro_mmus_1783, retro_mmus_1816, retro_mmus_1849, retro_mmus_1850, retro_mmus_1864, retro_mmus_1909, retro_mmus_2363, retro_mmus_2583, retro_mmus_2902, retro_mmus_3249, retro_mmus_480, retro_mmus_483,
Ictidomys tridecemlineatus ENSSTOG00000007687 possible_ortholog 4 retrogenes
retro_itri_1509, retro_itri_1740, retro_itri_1816, retro_itri_195,
Drosophila melanogaster FBgn0000557 ortholog_many2many 1 retrogene
retro_dmel_9,

# RetrogeneDB ID Identity (%) Coverage (%) ORF conservation Expression evidence RDV
1. retro_vpac_369 73.15 54.98
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2. retro_vpac_404 89.63 100.00
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3. retro_vpac_510 87.50 60.39
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4. retro_vpac_511 76.72 55.84
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5. retro_vpac_523 89.01 60.82
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6. retro_vpac_544 87.16 55.63
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7. retro_vpac_582 86.87 64.07
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8. retro_vpac_592 91.27 59.09
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9. retro_vpac_606 88.77 100.00
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Download FASTA sequences of all ENSVPAG00000007637 retrocopies