RetrogeneDB ID: | retro_cpor_647 | ||
Retrocopylocation | Organism: | Guinea Pig (Cavia porcellus) | |
Coordinates: | scaffold_21:14445112..14445539(+) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | BNIP3 | ||
Ensembl ID: | ENSCPOG00000005882 | ||
Aliases: | None | ||
Description: | None |
Percent Identity: | 71.62 % |
Parental protein coverage: | 74.74 % |
Number of stop codons detected: | 2 |
Number of frameshifts detected | 3 |
Parental | QSGVPGLQEENLQGSWVELHFSNNGNGSSVPASVSIYNGDLEKILLDAQHESGRSSSKSSHCDSPPRSQT |
QS.V..LQ.ENLQGSW.ELHF.NNGN.SS.PAS.SIY.GD.EKILL.AQ.ESG.SSS...HCD.PP.SQT | |
Retrocopy | QSEVLRLQDENLQGSWSELHFRNNGNRSSIPASISIYEGDMEKILLGAQYESGWSSSRRFHCDDPPYSQT |
Parental | PQDINRASETDTHSIGEKNSSQSEEDYI-ERRKEVESILKKNSDW-IWDWSSRPENIPPKEFL-FKHPKR |
PQ....ASET..HSIGEKNSS.SEE.Y..ERRK.VESI.KKNSDW.IW.WSS.PENI.PK.FL.FKH... | |
Retrocopy | PQN---ASETQMHSIGEKNSS*SEEHYL<ERRKKVESIWKKNSDW>IWNWSS*PENISPKQFL>FKHLQC |
Parental | TATLSMRN |
TATL..RN | |
Retrocopy | TATLRLRN |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP017611_brain | 0 .00 RPM | 34 .80 RPM |
SRP017611_kidney | 0 .00 RPM | 50 .56 RPM |
SRP017611_liver | 0 .00 RPM | 43 .74 RPM |
SRP040447_lung | 0 .00 RPM | 21 .24 RPM |
SRP040447_skeletal_muscle | 0 .01 RPM | 121 .68 RPM |