RetrogeneDB ID: | retro_cjac_2106 | ||
Retrocopylocation | Organism: | Marmoset (Callithrix jacchus) | |
Coordinates: | 22:20941544..20942104(-) | ||
Located in intron of: | ENSCJAG00000034515 | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | BNIP3 | ||
Ensembl ID: | ENSCJAG00000000228 | ||
Aliases: | None | ||
Description: | None |
Percent Identity: | 64.77 % |
Parental protein coverage: | 96.91 % |
Number of stop codons detected: | 5 |
Number of frameshifts detected | 5 |
Parental | PGMQEESLQGSWVELHFSNNGNGSSVPASVSIYNGDM-EKILLDAQHES-GRSSSKSSHCDSPPRSQTPQ |
P..QEESL..SWVELHF...GNG.SV.ASVSIYNGDM.EKILLD.Q.ES.GR..SK...CDSPP.S.TP. | |
Retrocopy | PELQEESL*ASWVELHFYSTGNGRSVSASVSIYNGDM<EKILLDFQYES>GRDHSKGHACDSPPHSKTPW |
Parental | DTNRASE-TDTHSIGEKNSSQSEEDYIERRKEVESI-LKKNSDWIWDWSSRPENIPP-KEFLFKHPKRTA |
DT..AS...DT.SI.EK.SS.S..DYIE..KEV.SI.LKKNS....D.SS.PENIP..KEFL.KH..RT. | |
Retrocopy | DTHKASK<IDTQSI*EKKSSESDQDYIEINKEVKSI<LKKNSN*T*DLSS*PENIPL>KEFLSKH-QRTQ |
Parental | SLSMRNTSVMKKGGIFSAEFLKVFLPSLLLSHLLAIGLGIYIGRRLTTSTSTF |
.LS........KG..FSAEF.KV.L.SLLLSHLLAI..GIY....LTTSTSTF | |
Retrocopy | LLSASEKHEHYKGDRFSAEFHKVSLSSLLLSHLLAIEWGIYVEIHLTTSTSTF |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP051959_colon | 0 .00 RPM | 16 .86 RPM |
SRP051959_heart | 0 .04 RPM | 51 .76 RPM |
SRP051959_kidney | 0 .00 RPM | 56 .49 RPM |
SRP051959_liver | 0 .00 RPM | 89 .05 RPM |
SRP051959_lung | 0 .00 RPM | 36 .63 RPM |
SRP051959_lymph_node | 0 .00 RPM | 15 .23 RPM |
SRP051959_skeletal_muscle | 0 .00 RPM | 249 .56 RPM |
SRP051959_spleen | 0 .00 RPM | 22 .44 RPM |