RetrogeneDB ID: | retro_ecab_969 | ||
Retrocopylocation | Organism: | Horse (Equus caballus) | |
Coordinates: | 8:33962909..33963177(+) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | BNIP3 | ||
Ensembl ID: | ENSECAG00000017458 | ||
Aliases: | None | ||
Description: | BCL2/adenovirus E1B 19kDa interacting protein 3 [Source:HGNC Symbol;Acc:1084] |
Percent Identity: | 52.69 % |
Parental protein coverage: | 50.28 % |
Number of stop codons detected: | 1 |
Number of frameshifts detected | 3 |
Parental | GSWVELHFSNNGNGS-SVPASVSIYNGEMEKILLDAQHESGRSSSKSSHCD-SPPRSQTPQDTNRAFETD |
G.W..L..S..GN...S.P.S.SIYN...E..L.DAQHES....S.S.HCD..PP.SQTP.DT.R..E.D | |
Retrocopy | GPWAGLPSSRSGNRE<SAPVSISIYNHDVEQTLPDAQHESR*CLSESTHCD>TPP-SQTPRDTDRVSEID |
Parental | -THSIGEKNSSQSEEDYIERRKE |
...S.G..N.SQ.EEDYIE.R.. | |
Retrocopy | >SRSTGGRNRSQPEEDYIETRNK |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP021940_articular_cartilage | 0 .00 RPM | 41 .79 RPM |
SRP021940_cerebellum | 0 .00 RPM | 77 .90 RPM |
SRP021940_embryo | 0 .00 RPM | 31 .51 RPM |
SRP021940_placental_villous | 0 .00 RPM | 58 .36 RPM |
SRP021940_synovial_membrane | 0 .00 RPM | 14 .63 RPM |
SRP021940_testis | 0 .00 RPM | 23 .34 RPM |