Parental gene:

BNIP3, ENSCPOG00000005882

Aliases:None
Description:None
Organism:Guinea Pig (Cavia porcellus)
Coordinates:scaffold_1:36179571..36193859(+)


>ENSCPOG00000005882
ATGTCGCAGAGCGGGGTCCCCGGACTGCAGGAGGAGAACCTGCAGGGCTCCTGGGTAGAATTGCACTTCAGTAATAATGG
GAATGGGAGCAGTGTTCCAGCCTCAGTTTCTATTTATAATGGTGACTTGGAAAAAATACTGCTAGATGCCCAGCATGAAT
CTGGACGGAGCAGCTCCAAGAGTTCTCACTGTGACAGCCCACCTCGCTCACAGACACCACAAGATATTAATAGAGCTTCT
GAAACAGATACACATAGCATTGGAGAAAAGAACAGTTCTCAGTCTGAGGAAGATTATATTGAGAGACGGAAAGAAGTTGA
AAGCATCTTGAAGAAAAACTCTGATTGGATATGGGATTGGTCAAGTCGGCCAGAAAATATCCCCCCTAAGGAGTTCCTCT
TTAAACACCCGAAGCGCACAGCTACTCTCAGTATGAGAAACACGAGCGTTATGAAGAAAGGGGGCATTTTCTCAGCAGAA
TTTCTGAAGGTTTTTCTACCATCTCTGCTGCTGTCTCATCTACTAGCCATTGGATTGGGGATCTACATTGGAAGGCGCCT
GACAACCTCCACCAGCACCTTT

Library Parental gene expression (RPM)
SRP017611_brain 34 .80 RPM
SRP017611_kidney 50 .56 RPM
SRP017611_liver 43 .74 RPM
SRP040447_lung 21 .24 RPM
SRP040447_skeletal_muscle 121 .68 RPM



Species Parental gene accession Homology type Retrogenes number
Choloepus hoffmanni ENSCHOG00000002150 ortholog_one2one 2 retrogenes
retro_chof_1555, retro_chof_559,
Callithrix jacchus ENSCJAG00000000228 ortholog_one2one 8 retrogenes
retro_cjac_1882, retro_cjac_2068, retro_cjac_2105, retro_cjac_2106, retro_cjac_2107, retro_cjac_2108, retro_cjac_3953, retro_cjac_4031,
Dipodomys ordii ENSDORG00000012511 ortholog_one2one 1 retrogene
retro_dord_431,
Equus caballus ENSECAG00000017458 ortholog_one2one 3 retrogenes
retro_ecab_652, retro_ecab_921, retro_ecab_969,
Echinops telfairi ENSETEG00000011704 ortholog_one2one 1 retrogene
retro_etel_1779,
Homo sapiens ENSG00000176171 ortholog_one2one 21 retrogenes
retro_hsap_1308, retro_hsap_1486, retro_hsap_1976, retro_hsap_1979, retro_hsap_1980, retro_hsap_1983, retro_hsap_1985, retro_hsap_1986, retro_hsap_1988, retro_hsap_1990, retro_hsap_2035, retro_hsap_2036, retro_hsap_2039, retro_hsap_2040, retro_hsap_2042, retro_hsap_2043, retro_hsap_2044, retro_hsap_2046, retro_hsap_3741, retro_hsap_3743, retro_hsap_3858,
Gorilla gorilla ENSGGOG00000014520 ortholog_one2one 17 retrogenes
retro_ggor_1138, retro_ggor_1433, retro_ggor_1434, retro_ggor_1436, retro_ggor_1437, retro_ggor_1438, retro_ggor_1439, retro_ggor_1440, retro_ggor_1466, retro_ggor_1467, retro_ggor_1468, retro_ggor_1469, retro_ggor_1472, retro_ggor_1474, retro_ggor_1475, retro_ggor_2521, retro_ggor_2599,
Microcebus murinus ENSMICG00000011985 ortholog_one2one 1 retrogene
retro_mmur_563,
Macaca mulatta ENSMMUG00000022445 ortholog_one2one 13 retrogenes
retro_mmul_1367, retro_mmul_1369, retro_mmul_1371, retro_mmul_1392, retro_mmul_1393, retro_mmul_1394, retro_mmul_1681, retro_mmul_355, retro_mmul_421, retro_mmul_739, retro_mmul_754, retro_mmul_772, retro_mmul_819,
Mus musculus ENSMUSG00000078566 ortholog_one2one 4 retrogenes
retro_mmus_1194, retro_mmus_1195, retro_mmus_2207, retro_mmus_3577,
Nomascus leucogenys ENSNLEG00000001613 ortholog_one2one 26 retrogenes
retro_nleu_140, retro_nleu_1708, retro_nleu_2220, retro_nleu_2306, retro_nleu_2617, retro_nleu_2619, retro_nleu_2620, retro_nleu_2621, retro_nleu_2870, retro_nleu_2872, retro_nleu_2903, retro_nleu_2904, retro_nleu_2905, retro_nleu_2907, retro_nleu_2910, retro_nleu_2917, retro_nleu_2918, retro_nleu_2919, retro_nleu_2920, retro_nleu_2921, retro_nleu_2923, retro_nleu_2924, retro_nleu_2942, retro_nleu_3064, retro_nleu_3103, retro_nleu_3104,
Pongo abelii ENSPPYG00000002771 ortholog_one2one 18 retrogenes
retro_pabe_1629, retro_pabe_1631, retro_pabe_1632, retro_pabe_1633, retro_pabe_1665, retro_pabe_1666, retro_pabe_1667, retro_pabe_1670, retro_pabe_1688, retro_pabe_1694, retro_pabe_1703, retro_pabe_2499, retro_pabe_3049, retro_pabe_3050, retro_pabe_3120, retro_pabe_3122, retro_pabe_3533, retro_pabe_3569,
Pan troglodytes ENSPTRG00000003067 ortholog_one2one 17 retrogenes
retro_ptro_1005, retro_ptro_1317, retro_ptro_1319, retro_ptro_1323, retro_ptro_1324, retro_ptro_1325, retro_ptro_1327, retro_ptro_1353, retro_ptro_1354, retro_ptro_1356, retro_ptro_1357, retro_ptro_1359, retro_ptro_1360, retro_ptro_1361, retro_ptro_1363, retro_ptro_2629, retro_ptro_3062,
Rattus norvegicus ENSRNOG00000017243 ortholog_one2one 3 retrogenes
retro_rnor_1070, retro_rnor_2645, retro_rnor_2732,
Sus scrofa ENSSSCG00000024388 ortholog_one2one 1 retrogene
retro_sscr_827,
Ictidomys tridecemlineatus ENSSTOG00000012456 ortholog_one2one 1 retrogene
retro_itri_299,
Tupaia belangeri ENSTBEG00000000487 ortholog_one2one 1 retrogene
retro_tbel_2600,
Tursiops truncatus ENSTTRG00000008038 ortholog_one2one 1 retrogene
retro_ttru_1538,

# RetrogeneDB ID Identity (%) Coverage (%) ORF conservation Expression evidence RDV
1. retro_cpor_344 62.07 57.22
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2. retro_cpor_376 59.65 56.70
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3. retro_cpor_496 66.42 68.04
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4. retro_cpor_600 64.10 56.70
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5. retro_cpor_647 71.62 74.74
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6. retro_cpor_1138 60.99 92.78
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7. retro_cpor_1283 67.17 100.00
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Download FASTA sequences of all ENSCPOG00000005882 retrocopies