RetrogeneDB ID:

retro_cpor_751

Retrocopy
location
Organism:Guinea Pig (Cavia porcellus)
Coordinates:scaffold_26:25870656..25871078(+)
Located in intron of:None
Retrocopy
information
Ensembl ID:None
Aliases:None
Status:NOVEL
Parental gene
information
Parental gene summary:
Parental gene symbol:UBE2V2
Ensembl ID:ENSCPOG00000014413
Aliases:None
Description:None


Retrocopy-Parental alignment summary:






>retro_cpor_751
ATGGTGGTCTCCACAGGAGTTAAAGTTCCTGGTCATTTTTGCTTGTGGGAAGAACTTAAAGAAAGACAAAAAGGAGTAGG
TGATGGTATGGTTAGATTGGGCCTTGAAGATGATGAAATAGGGCATTTACAAGATGGATAGGCATGATTATTGGGCCATC
AAGGACAAATTATGAAAACAGACTATATAGCCTGAAAGTAGAAGGTGCTTCTAAACAATCAGAAGCTCCTCCATCCGTTA
GTTTTATAACAAAAATTAATGTGAATGGAATAAGTAATTCCAGTAGAATGGTGGATGTATGCAGCATACCAGTTTTAGCA
AAATGGCAAGATTCAAATAGCATTAAAGTCGTACTTGAAGAGCTAAGATATCTAATGATGTCTAGAAAAAACCAGCAGAA
GGCCAAGCATACATACAACAAT

ORF - retro_cpor_751 Open Reading Frame is not conserved.
Retrocopy - Parental Gene Alignment summary:
Percent Identity: 67.12 %
Parental protein coverage: 100. %
Number of stop codons detected: 0
Number of frameshifts detected 1


Retrocopy - Parental Gene Alignment:

ParentalMFFCIGVKVPRNFRLLEELEEGQKGVGDGTVSWGLEDDE-DMTLTRWTGMIIGPPRTNYENRIYSLKVEC
M....GVKVP..F.L.EEL.E.QKGVGDG.V..GLEDDE.....TRW.GMIIGP.RTNYENR.YSLKVE.
RetrocopyMVVSTGVKVPGHFCLWEELKERQKGVGDGMVRLGLEDDE<NRAFTRWIGMIIGPSRTNYENRLYSLKVEG
ParentalGPKYPEAPPSVRFVTKINMNGINNSSGMVDARSIPVLAKWQNSYSIKVVLQELRRLMMSKENMKLPQPPE
..K..EAPPSV.F.TKIN.NGI.NSS.MVD..SIPVLAKWQ.S.SIKVVL.ELR.LMMS..N....Q...
RetrocopyASKQSEAPPSVSFITKINVNGISNSSRMVDVCSIPVLAKWQDSNSIKVVLEELRYLMMSRKN----QQKA
ParentalGQTYNN
..TYNN
RetrocopyKHTYNN

Legend:
*Stop codon
>Forward frameshift by one nucleotide
<Reverse frameshift by one nucleotide






(Hint: click retrocopy or parental gene accession number on the plot's legend, to show / hide expression level values)

Expression validation based on RNA-Seq data:
Library Retrocopy expression Parental gene expression
SRP017611_brain 0 .00 RPM 19 .10 RPM
SRP017611_kidney 0 .00 RPM 11 .20 RPM
SRP017611_liver 0 .00 RPM 9 .14 RPM
SRP040447_lung 0 .00 RPM 12 .36 RPM
SRP040447_skeletal_muscle 0 .00 RPM 9 .73 RPM
Cavia porcellus was not studied using ChIP-Seq data.
No EST(s) were mapped for retro_cpor_751 retrocopy.
Cavia porcellus was not studied using FANTOM5 data.
retro_cpor_751 was not experimentally validated.

Retrocopy orthology:
Cavia porcellus does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to help section.

Parental genes homology:
Parental genes homology involve 10 parental genes, and 59 retrocopies.

Species Parental gene accession Retrocopies number
Canis familiaris ENSCAFG000000288271 retrocopy
Cavia porcellus ENSCPOG00000014413 4 retrocopies
Felis catus ENSFCAG000000076026 retrocopies
Macropus eugenii ENSMEUG000000165811 retrocopy
Myotis lucifugus ENSMLUG000000020576 retrocopies
Macaca mulatta ENSMMUG000000082231 retrocopy
Monodelphis domestica ENSMODG0000001019110 retrocopies
Mustela putorius furoENSMPUG000000010102 retrocopies
Oryctolagus cuniculus ENSOCUG000000069331 retrocopy
Tupaia belangeri ENSTBEG0000001572027 retrocopies



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