RetrogeneDB ID: | retro_mdom_736 | ||
Retrocopylocation | Organism: | Opossum (Monodelphis domestica) | |
Coordinates: | 2:264141177..264141598(+) | ||
Located in intron of: | ENSMODG00000007285 | ||
Retrocopyinformation | Ensembl ID: | ENSMODG00000007291 | |
Aliases: | None | ||
Status: | KNOWN_PSEUDOGENE | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | None | ||
Ensembl ID: | ENSMODG00000010191 | ||
Aliases: | None | ||
Description: | None |
Percent Identity: | 89.04 % |
Parental protein coverage: | 100. % |
Number of stop codons detected: | 0 |
Number of frameshifts detected | 1 |
Parental | MAVSTGVKVPRNFRLLEELEEGQKGVGDGTVSWGLEDDEDMTLTRWTGMIIGPPRTNYENRIYSLKVECG |
MAVSTGVKVP.NF.LLEELEEGQKGVGD.TVSWGLEDDED...TRWTGMIIG..RTNYENRIYSLKVECG | |
Retrocopy | MAVSTGVKVPLNFCLLEELEEGQKGVGDCTVSWGLEDDED---TRWTGMIIGL-RTNYENRIYSLKVECG |
Parental | PKYPEAPPTVRFVTKINMNGINNSNGMVDARSIPVLAKWQNSYSIKVVLQELRRLMMSKENMKL-PQPPE |
PKYPEAPPTVRFVTKINMNGINNSNGMVDARSIPVLAKWQNSYSIKVVLQELR.LMM.KEN....P.P.E | |
Retrocopy | PKYPEAPPTVRFVTKINMNGINNSNGMVDARSIPVLAKWQNSYSIKVVLQELRHLMMFKENKAS>PPP-E |
Parental | GQTYSN |
GQTYSN | |
Retrocopy | GQTYSN |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP007412_brain | 0 .00 RPM | 0 .00 RPM |
SRP007412_cerebellum | 0 .00 RPM | 0 .00 RPM |
SRP007412_heart | 0 .00 RPM | 0 .00 RPM |
SRP007412_kidney | 0 .00 RPM | 0 .00 RPM |
SRP007412_liver | 0 .00 RPM | 0 .00 RPM |
SRP007412_testis | 0 .00 RPM | 0 .00 RPM |