RetrogeneDB ID: | retro_mdom_1660 | ||
Retrocopylocation | Organism: | Opossum (Monodelphis domestica) | |
Coordinates: | 6:78913695..78914001(-) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | None | ||
Ensembl ID: | ENSMODG00000010191 | ||
Aliases: | None | ||
Description: | None |
Percent Identity: | 92.16 % |
Parental protein coverage: | 70.34 % |
Number of stop codons detected: | 2 |
Number of frameshifts detected | 0 |
Parental | TRWTGMIIGPPRTNYENRIYSLKVECGPKYPEAPPTVRFVTKINMNGINNSNGMVDARSIPVLAKWQNSY |
TR.TGMII.PPRTNYENRIYSLKVECG.KYPEAPPTVRFVTK.NMNGINNSNGMVDA.SIPVLAK.QNSY | |
Retrocopy | TR*TGMIIRPPRTNYENRIYSLKVECGLKYPEAPPTVRFVTKNNMNGINNSNGMVDAWSIPVLAK*QNSY |
Parental | SIKVVLQELRRLMMSKENMKLPQPPEGQTYSN |
SIKVVL.ELRRLMMSKENMKL.QPPEGQTYSN | |
Retrocopy | SIKVVLPELRRLMMSKENMKLQQPPEGQTYSN |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP007412_brain | 0 .00 RPM | 0 .00 RPM |
SRP007412_cerebellum | 0 .00 RPM | 0 .00 RPM |
SRP007412_heart | 0 .00 RPM | 0 .00 RPM |
SRP007412_kidney | 0 .00 RPM | 0 .00 RPM |
SRP007412_liver | 0 .00 RPM | 0 .00 RPM |
SRP007412_testis | 0 .00 RPM | 0 .00 RPM |