RetrogeneDB ID: | retro_cpor_786 | ||
Retrocopylocation | Organism: | Guinea Pig (Cavia porcellus) | |
Coordinates: | scaffold_28:26177893..26178305(+) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | PPIH | ||
Ensembl ID: | ENSCPOG00000008214 | ||
Aliases: | None | ||
Description: | Peptidyl-prolyl cis-trans isomerase [Source:UniProtKB/TrEMBL;Acc:H0VBU7] |
Percent Identity: | 66.43 % |
Parental protein coverage: | 77.97 % |
Number of stop codons detected: | 2 |
Number of frameshifts detected | 2 |
Parental | ELFADVVPKTAEN-FRQFCTGEFRKDGVPIGYKGSTFHRVIKDFMIQGGD-FVNGDGTGVASIYRGPFAD |
E...D...K.A.N..RQFCTGEFRKDG.PIG.KGSTFHRVIKDF.IQG.D.FV.GDGTGVASIY..PF.. | |
Retrocopy | EVSVDLMSKIAKN<LRQFCTGEFRKDGAPIGHKGSTFHRVIKDFTIQGED<FVTGDGTGVASIYQSPFVG |
Parental | ENFKLRHSAPGLLSMANSGPSTNGCQFFITCSKCDWLDGKHVVFGKIIDGLLVMRKIENVPTGPNNKPKL |
.N.KLR...P.LLS.ANS.P.TN.C.FFIT..KCDW.DGKH.VF..I.D..LV.R..ENV.T..NNK.KL | |
Retrocopy | *NLKLRR*VPSLLSEANSDPGTNACLFFITHTKCDWRDGKHGVFVIITDECLVIRETENVSTAANNKYKL |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP017611_brain | 0 .06 RPM | 9 .38 RPM |
SRP017611_kidney | 0 .10 RPM | 11 .83 RPM |
SRP017611_liver | 0 .00 RPM | 9 .66 RPM |
SRP040447_lung | 0 .00 RPM | 11 .80 RPM |
SRP040447_skeletal_muscle | 0 .00 RPM | 5 .51 RPM |