RetrogeneDB ID: | retro_pcap_81 | ||
Retrocopylocation | Organism: | Hyrax (Procavia capensis) | |
Coordinates: | GeneScaffold_4610:73038..73569(-) | ||
Located in intron of: | ENSPCAG00000001079 | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | PPIH | ||
Ensembl ID: | ENSPCAG00000011139 | ||
Aliases: | None | ||
Description: | peptidylprolyl isomerase H (cyclophilin H) [Source:HGNC Symbol;Acc:14651] |
Percent Identity: | 80.79 % |
Parental protein coverage: | 100. % |
Number of stop codons detected: | 1 |
Number of frameshifts detected | 0 |
Parental | MAVANSSPVNPVVFFDVSIGGQEVGRMKIELFADVVPKTAENFRQFCTGEFRKDGVPIGYKGSTFHXXXX |
MAVA.SSPV.PVVFF.VSIGGQEVG..KIELFADVVPK.AEN...FC.GEFRKDGV.IGYKGSTFH.... | |
Retrocopy | MAVADSSPVSPVVFFGVSIGGQEVGCVKIELFADVVPKAAENL*PFCMGEFRKDGVRIGYKGSTFHRVVK |
Parental | XXXXXXXXXXXGDGTGVASIYRGPFADENFKLRHSAPGLLSMANSGPSTNGCQFFITCSKCDWLDGKHVV |
...........GDGTGVASIYR.PFADENFK.RHSAPGLLSMA.SGPSTNGCQFFITCSKC.WLDGKHVV | |
Retrocopy | DFLIQGGDFVNGDGTGVASIYREPFADENFKPRHSAPGLLSMASSGPSTNGCQFFITCSKCHWLDGKHVV |
Parental | FGKIIDGLLVMRKIENVPTGPNNKPKLPVVISQCGEM |
FGKIIDGLLVMRKIENVPT.P..KPKLPVVISQC.EM | |
Retrocopy | FGKIIDGLLVMRKIENVPTEPKHKPKLPVVISQCREM |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |