RetrogeneDB ID: | retro_dnov_1717 | ||
Retrocopylocation | Organism: | Armadillo (Dasypus novemcinctus) | |
Coordinates: | scaffold_274328:251..597(-) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | ENSDNOG00000025221 | |
Aliases: | None | ||
Status: | KNOWN_PSEUDOGENE | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | RPS8 | ||
Ensembl ID: | ENSDNOG00000025236 | ||
Aliases: | None | ||
Description: | ribosomal protein S8 [Source:HGNC Symbol;Acc:10441] |
Percent Identity: | 75.21 % |
Parental protein coverage: | 53.7 % |
Number of stop codons detected: | 0 |
Number of frameshifts detected | 4 |
Parental | FPLSSQRLAMGISRDNWHKRRKTG-GKRKPYHKKRKYELGRPAANT-IG-PRRIHTVRVRGGNKKYRALR |
FPL..QR...GIS.DNWHK..KTG.GKRKPYHKKRKY.LGRPA.NT.IG.P...HTV.V.GGN.KY.ALR | |
Retrocopy | FPLFRQRHVTGISWDNWHKCCKTG<GKRKPYHKKRKYGLGRPAVNTKIG>PLHTHTVCVQGGN-KYYALR |
Parental | L-DVGNFSWGSECCTRKTRII-DVVYNASNNELVRTKTLVKNCIVLIDSTP |
L.DV.NFSWGSECCT.K.RII..VVYNA.NNELV..KTLVKNCIV.IDSTP | |
Retrocopy | L<DVRNFSWGSECCTHKRRII<NVVYNAPNNELVHNKTLVKNCIVFIDSTP |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP012922_ascending_colon | 0 .58 RPM | 666 .05 RPM |
SRP012922_cerebellum | 0 .14 RPM | 396 .60 RPM |
SRP012922_heart | 0 .00 RPM | 393 .99 RPM |
SRP012922_kidney | 0 .00 RPM | 728 .57 RPM |
SRP012922_liver | 0 .00 RPM | 389 .96 RPM |
SRP012922_lung | 0 .00 RPM | 975 .76 RPM |
SRP012922_quadricep_muscle | 0 .00 RPM | 562 .18 RPM |
SRP012922_spleen | 0 .11 RPM | 1128 .24 RPM |