RetrogeneDB ID: | retro_dnov_2101 | ||
Retrocopy location | Organism: | Armadillo (Dasypus novemcinctus) | |
| Coordinates: | scaffold_4780:55485..55884(-) | ||
| Located in intron of: | None | ||
Retrocopy information | Ensembl ID: | None | |
| Aliases: | None | ||
| Status: | NOVEL | ||
Parental gene information | Parental gene summary: | ||
| Parental gene symbol: | BNIP3L | ||
| Ensembl ID: | ENSDNOG00000016179 | ||
| Aliases: | None | ||
| Description: | BCL2/adenovirus E1B 19kDa interacting protein 3-like [Source:HGNC Symbol;Acc:1085] |
Retrocopy-Parental alignment summary:
>retro_dnov_2101
ACAAGGGGCAGTTCTCATTGTGATCGCCCTTTCCCACAAGAAGATGTAGAGATGATGTTGGGTTGGATGTGGAAAGTCAT
ACCAGCAGGAACCACAGCTCTCAGTCAGAAGCAGTTGAAGAAGGAGAGAAAGAAGTCAAGGCTTTGAAGAAAAGTGTAGA
CTGGTGTGCGACTAGTCCAGTAGACCCGAAAACATTCCACCTATAGAGTTCCACTTCTAGCACCCTAAGCATTCTCCTTC
TTTAGGCATGAGAAAAAGTAGAACCATGGAGAAAGAGAGTATTTCCTCTGCAGAATTTTCTTAAAGCATTCATCCCATCT
TTCCATTTCCCATGTTTTGGTTTGGGAGGTAGGCATCTATATTGGAGACCAACTGAGCATGCCTTCAGTCAGCCCCTAC
ORF - retro_dnov_2101 Open Reading Frame is not conserved.
Retrocopy - Parental Gene Alignment summary:
| Percent Identity: | 63.04 % |
| Parental protein coverage: | 60.73 % |
| Number of stop codons detected: | 3 |
| Number of frameshifts detected: | 3 |
Retrocopy - Parental Gene Alignment:
| Parental | SRGSSHCD-SPSPQED--GQIMFDVEMHTSRDHSSQSEEEVGEGEKEVEALKKSVDW-VSDWSSRPENIP |
| .RGSSHCD.SP.P..........DVE.HTSR.HSSQSE..V.EGEKEV.ALKKSVDW.V.D.SSRPENIP | |
| Retrocopy | TRGSSHCD<SPFPTRRCRDDVGLDVESHTSRNHSSQSEA-VEEGEKEVKALKKSVDW<VCD*SSRPENIP |
| Parental | PKEFHFRHPKRSASLSMRKSGAMKKGGVFSAEFLKVFIP-SLFISHVLALGLGIYIGKRLSTPSASTY |
| P.EFHF.HPK.S.SL.MRKS..M.K....SAEF.....P..L.ISHVL....GIYIG..LS.PS.S.Y | |
| Retrocopy | PIEFHF*HPKHSPSLGMRKSRTMEKESISSAEFS*SIHP<HLSISHVLVWEVGIYIGDQLSMPSVSPY |
Legend:
| * | Stop codon |
| > | Forward frameshift by one nucleotide |
| < | Reverse frameshift by one nucleotide |
(Hint: click retrocopy or parental gene accession number on the plot's legend, to show / hide expression level values)
Expression validation based on RNA-Seq data:
| Library | Retrocopy expression | Parental gene expression |
|---|---|---|
| SRP012922_ascending_colon | 0 .00 RPM | 40 .84 RPM |
| SRP012922_cerebellum | 0 .00 RPM | 41 .79 RPM |
| SRP012922_heart | 0 .00 RPM | 9 .98 RPM |
| SRP012922_kidney | 0 .00 RPM | 15 .33 RPM |
| SRP012922_liver | 0 .00 RPM | 21 .52 RPM |
| SRP012922_lung | 0 .00 RPM | 45 .36 RPM |
| SRP012922_quadricep_muscle | 0 .00 RPM | 6 .40 RPM |
| SRP012922_spleen | 0 .00 RPM | 159 .10 RPM |
Dasypus novemcinctus was not studied using ChIP-Seq data.
Dasypus novemcinctus was not studied using EST data.
Dasypus novemcinctus was not studied using FANTOM5 data.
retro_dnov_2101 was not experimentally validated.