RetrogeneDB ID: | retro_dnov_2685 | ||
Retrocopy location | Organism: | Armadillo (Dasypus novemcinctus) | |
| Coordinates: | scaffold_9846:44355..44700(-) | ||
| Located in intron of: | None | ||
Retrocopy information | Ensembl ID: | None | |
| Aliases: | None | ||
| Status: | NOVEL | ||
Parental gene information | Parental gene summary: | ||
| Parental gene symbol: | CYB5B | ||
| Ensembl ID: | ENSDNOG00000008313 | ||
| Aliases: | None | ||
| Description: | cytochrome b5 type B (outer mitochondrial membrane) [Source:HGNC Symbol;Acc:24374] |
Retrocopy-Parental alignment summary:
>retro_dnov_2685
GCCTCAGGAAAGGGCAAGAGGTCGAGACTTCAGTCACCTGTCAAAAAGTTGGAAAAAGGGGTAAAGCACAACTCTTTGAA
GAAATTATGGCTGGTTATCCACGGTGGAGTCTACGATGTCTCTGGCTTCCTTGCTGAGCATCCTGGTGGAGAGGAAGTTC
TGCTAGAACAAGATGGTACAAATGCAAGTGAGAGCTTTGAAGATACAGGCCACACCTTTGATGCCACGGAAATGCTGAAG
CAGTATTATATTGGTTATTTCCATCCGAATGACATTAAAACTGAAAATGATAGCAAGCATCTTTCAAAACATAATACATG
CAAAAGTTGCTGGTCAAATTGGGTA
ORF - retro_dnov_2685 Open Reading Frame is conserved.
Retrocopy - Parental Gene Alignment summary:
| Percent Identity: | 55.17 % |
| Parental protein coverage: | 78.23 % |
| Number of stop codons detected: | 0 |
| Number of frameshifts detected: | 0 |
Retrocopy - Parental Gene Alignment:
| Parental | ASGSDGKGPEVETSITYCEE-VASSSSKELWLVIHGQIYDVSSFLNEXXXXXEVLLEQAGVDASESFEDV |
| ASG..GK...........E..V...S.K.LWLVIHG..YDVS.FL.E.....EVLLEQ.G..ASESFED. | |
| Retrocopy | ASGK-GKRSRLQSPVKKLEKGVKHNSLKKLWLVIHGGVYDVSGFLAEHPGGEEVLLEQDGTNASESFEDT |
| Parental | GHSSDAREMLKQYYIGDVHPSDIKTESGSKXXXXXXXXXXCWSYWV |
| GH..DA.EMLKQYYIG..HP.DIKTE..SK..........CWS.WV | |
| Retrocopy | GHTFDATEMLKQYYIGYFHPNDIKTENDSKHLSKHNTCKSCWSNWV |
Legend:
| * | Stop codon |
| > | Forward frameshift by one nucleotide |
| < | Reverse frameshift by one nucleotide |
(Hint: click retrocopy or parental gene accession number on the plot's legend, to show / hide expression level values)
Expression validation based on RNA-Seq data:
| Library | Retrocopy expression | Parental gene expression |
|---|---|---|
| SRP012922_ascending_colon | 0 .00 RPM | 16 .53 RPM |
| SRP012922_cerebellum | 0 .00 RPM | 6 .46 RPM |
| SRP012922_heart | 0 .00 RPM | 7 .19 RPM |
| SRP012922_kidney | 0 .00 RPM | 16 .43 RPM |
| SRP012922_liver | 0 .00 RPM | 2 .48 RPM |
| SRP012922_lung | 0 .00 RPM | 8 .71 RPM |
| SRP012922_quadricep_muscle | 0 .00 RPM | 3 .98 RPM |
| SRP012922_spleen | 0 .00 RPM | 10 .42 RPM |
Dasypus novemcinctus was not studied using ChIP-Seq data.
Dasypus novemcinctus was not studied using EST data.
Dasypus novemcinctus was not studied using FANTOM5 data.
retro_dnov_2685 was not experimentally validated.