RetrogeneDB ID: | retro_eeur_603 | ||
Retrocopylocation | Organism: | Hedgehog (Erinaceus europaeus) | |
Coordinates: | scaffold_359993:6303..6762(-) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | ENSEEUG00000014488 | |
Aliases: | None | ||
Status: | KNOWN_PSEUDOGENE | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | LSM12 | ||
Ensembl ID: | ENSEEUG00000002419 | ||
Aliases: | None | ||
Description: | LSM12 homolog (S. cerevisiae) [Source:HGNC Symbol;Acc:26407] |
Percent Identity: | 99.35 % |
Parental protein coverage: | 100. % |
Number of stop codons detected: | 0 |
Number of frameshifts detected | 0 |
Parental | CPSSSGKPNHADILLINLQYVSEVEIINDRTETPPPLASLNVSKLASKARTEKEEKLSQAYAISAGVSLE |
CPSSSGKPNHADILLINLQYVSEVEIINDRTETPPPLASLNVSKLASKARTEKEEKLSQAYAISAGVSLE | |
Retrocopy | CPSSSGKPNHADILLINLQYVSEVEIINDRTETPPPLASLNVSKLASKARTEKEEKLSQAYAISAGVSLE |
Parental | GQQLFQTIHKTIKDCKWQEKNIVVMEEVVITPPYQVENCKGKEGSALSHVRKIVEKHFRDVESLKIMQRS |
GQQLFQTIHKTIKDCKWQEKNIVVMEEVVITPPYQVENCKGKEGSALSHVRKIVEKHFRDVES.KIMQRS | |
Retrocopy | GQQLFQTIHKTIKDCKWQEKNIVVMEEVVITPPYQVENCKGKEGSALSHVRKIVEKHFRDVESQKIMQRS |
Parental | QAQQPQKEAALSS |
QAQQPQKEAALSS | |
Retrocopy | QAQQPQKEAALSS |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP017611_brain | 11 .44 RPM | 2 .58 RPM |
SRP017611_kidney | 9 .00 RPM | 3 .94 RPM |
SRP017611_liver | 11 .09 RPM | 1 .61 RPM |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Choloepus hoffmanni | ENSCHOG00000001198 | 1 retrocopy | |
Dipodomys ordii | ENSDORG00000016381 | 1 retrocopy | |
Erinaceus europaeus | ENSEEUG00000002419 | 1 retrocopy |
retro_eeur_603 ,
|
Echinops telfairi | ENSETEG00000008374 | 1 retrocopy | |
Macropus eugenii | ENSMEUG00000007501 | 1 retrocopy | |
Myotis lucifugus | ENSMLUG00000006391 | 1 retrocopy | |
Macaca mulatta | ENSMMUG00000006804 | 1 retrocopy | |
Oryzias latipes | ENSORLG00000011310 | 1 retrocopy | |
Pteropus vampyrus | ENSPVAG00000013706 | 1 retrocopy | |
Tupaia belangeri | ENSTBEG00000012523 | 2 retrocopies |