Parental gene:

LSM12, ENSMMUG00000006804

Aliases:None
Description:protein LSM12 homolog [Source:RefSeq peptide;Acc:NP_001253722]
Organism:Rhesus macaque (Macaca mulatta)
Coordinates:16:54110036..54147785(-)


>ENSMMUG00000006804
ATGGCGGCTCCTCCGGGCGAGTACTTCAGCGTTGGGAGCCAGGTGTCGTGCCGGACGTGCCAGGAGCAGCGGCTGCAGGG
CGAGGTGGTAGCCTTCGACTACCAATCCAAAATGCTGGCTTTAAAATGTCCCTCTTCCAGTGGAAAGCCCAACCATGCAG
ACATCTTGCTCATAAACTTACAGTATGTTTCAGAAGTGGAAATAATTAATGACCGAACAGAAACCCCTCCTCCCCTAGCT
TCACTCAATGTTAGTAAGCTTGCCAGCAAAGCACGGACAGAGAAGGAGGAGAAGCTGAGCCAGGCCTATGCAATCAGTGC
TGGTGTCTCTCTAGAGGGCCAGCAGCTCTTCCAGACCATTCACAAGACCATTAAAGACTGTAAATGGCAAGAAAAAAACA
TCGTAGTCATGGAAGAAGTTGTTATTACACCCCCATATCAAGTGGAAAACTGTAAAGGCAAAGAGGGGAGTGCACTGAGC
CATGTACGCAAAATAGTTGAAAAACATTTTAGAGACGTGGAAAGCCAAAAGATACTGCAACGTTCACAAGCCCAGCAACC
ACAGAAGGAGGCTGCCCTGTCATCCTGA

Library Parental gene expression (RPM)
SRP007412_brain 29 .47 RPM
SRP007412_brain_prefrontal_cortex 33 .79 RPM
SRP007412_cerebellum 23 .83 RPM
SRP007412_heart 20 .08 RPM
SRP007412_kidney 26 .99 RPM
SRP007412_liver 14 .41 RPM
SRP007412_testis 64 .98 RPM



Species Parental gene accession Homology type Retrogenes number
Canis familiaris ENSCAFG00000014379 ortholog_one2one 2 retrogenes
retro_cfam_1843, retro_cfam_312,
Choloepus hoffmanni ENSCHOG00000001198 possible_ortholog 1 retrogene
retro_chof_1429,
Dipodomys ordii ENSDORG00000016381 possible_ortholog 1 retrogene
retro_dord_596,
Erinaceus europaeus ENSEEUG00000002419 possible_ortholog 1 retrogene
retro_eeur_603,
Echinops telfairi ENSETEG00000008374 ortholog_one2many 1 retrogene
retro_etel_21,
Felis catus ENSFCAG00000029083 ortholog_one2one 1 retrogene
retro_fcat_787,
Homo sapiens ENSG00000161654 ortholog_one2one 1 retrogene
retro_hsap_4041,
Loxodonta africana ENSLAFG00000005202 ortholog_one2one 1 retrogene
retro_lafr_906,
Macropus eugenii ENSMEUG00000007501 ortholog_one2many 1 retrogene
retro_meug_1462,
Myotis lucifugus ENSMLUG00000006391 possible_ortholog 1 retrogene
retro_mluc_2205,
Mus musculus ENSMUSG00000020922 ortholog_one2one 1 retrogene
retro_mmus_2683,
Otolemur garnettii ENSOGAG00000010489 ortholog_one2one 2 retrogenes
retro_ogar_1771, retro_ogar_2447,
Oryzias latipes ENSORLG00000011310 ortholog_many2many 1 retrogene
retro_olat_12,
Pteropus vampyrus ENSPVAG00000013706 possible_ortholog 1 retrogene
retro_pvam_172,
Rattus norvegicus ENSRNOG00000020894 ortholog_one2one 1 retrogene
retro_rnor_2845,
Tupaia belangeri ENSTBEG00000012523 ortholog_one2many 2 retrogenes
retro_tbel_3062, retro_tbel_60,
Vicugna pacos ENSVPAG00000011145 ortholog_one2one 1 retrogene
retro_vpac_627,

# RetrogeneDB ID Identity (%) Coverage (%) ORF conservation Expression evidence RDV
1. retro_mmul_3 93.58 55.90
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Download FASTA sequences of all ENSMMUG00000006804 retrocopies