RetrogeneDB ID: | retro_mluc_2205 | ||
Retrocopylocation | Organism: | Microbat (Myotis lucifugus) | |
Coordinates: | GL430099:181527..182107(-) | ||
Located in intron of: | ENSMLUG00000000709 | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | LSM12 | ||
Ensembl ID: | ENSMLUG00000006391 | ||
Aliases: | None | ||
Description: | None |
Percent Identity: | 78.17 % |
Parental protein coverage: | 100. % |
Number of stop codons detected: | 2 |
Number of frameshifts detected | 2 |
Parental | MAAPPGEYFSVGSQVSCRTCQEQRLQGEVVAFDYQSKMLALKCPSSSGKPNHADILLINLQYVSEVEIIN |
M.APPG.YF....QVSC.TCQEQRLQG....FD.QSK.LALKCPSSSGKP.H.D.L.I.L.YVS.VEIIN | |
Retrocopy | MVAPPGKYFGIRGQVSCQTCQEQRLQGRAIPFDCQSKTLALKCPSSSGKPKHVDMLVIKL*YVSKVEIIN |
Parental | DRTETPPPLASLNVSKLASKARTEKEE-KLSQAYAISAGVSLEGQQLFQTIHKTIKDCKWQEKNIIVMEE |
D.TETP.PLASLNVSKLASKA.TE.EE.KLSQAYA.SAGVSLEGQQ.FQTIHKTI.D.KWQEKNI.VMEE | |
Retrocopy | DPTETPSPLASLNVSKLASKAWTE-EE<KLSQAYAVSAGVSLEGQQPFQTIHKTINDFKWQEKNITVMEE |
Parental | VVITPPYQVENCK-GKEGSALSHVRKIVEKHFRDVESQKILQRSQAQQPQKEAALSS |
.VITP.Y.VE..K..KE.SALSHV.KIV.KH.RDVESQK.LQRSQAQQPQ.EAALSS | |
Retrocopy | AVITPSY*VETRK<SKEESALSHVHKIVGKHVRDVESQKVLQRSQAQQPQEEAALSS |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Choloepus hoffmanni | ENSCHOG00000001198 | 1 retrocopy | |
Dipodomys ordii | ENSDORG00000016381 | 1 retrocopy | |
Erinaceus europaeus | ENSEEUG00000002419 | 1 retrocopy | |
Echinops telfairi | ENSETEG00000008374 | 1 retrocopy | |
Macropus eugenii | ENSMEUG00000007501 | 1 retrocopy | |
Myotis lucifugus | ENSMLUG00000006391 | 1 retrocopy |
retro_mluc_2205 ,
|
Macaca mulatta | ENSMMUG00000006804 | 1 retrocopy | |
Oryzias latipes | ENSORLG00000011310 | 1 retrocopy | |
Pteropus vampyrus | ENSPVAG00000013706 | 1 retrocopy | |
Tupaia belangeri | ENSTBEG00000012523 | 2 retrocopies |