RetrogeneDB ID: | retro_tbel_3062 | ||
Retrocopylocation | Organism: | Treeshrew (Tupaia belangeri) | |
Coordinates: | scaffold_128925:247504..248000(-) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | None | ||
Ensembl ID: | ENSTBEG00000012523 | ||
Aliases: | None | ||
Description: | None |
Percent Identity: | 69.59 % |
Parental protein coverage: | 85.64 % |
Number of stop codons detected: | 1 |
Number of frameshifts detected | 4 |
Parental | EYFSVGSQVSCRTCQEQRLQGEVVAFDYQSKMLALKCPSSSGKPNHADILLINLQYVSEVEIINDRTETP |
.YF..GSQ.SC..CQE..LQG.VVAF.YQS..L.L...SS.GKPNHADILLINL..VS.V.I.ND..ETP | |
Retrocopy | KYFNIGSQGSCLKCQE*WLQGKVVAFNYQSTLLTLQGASSGGKPNHADILLINLEHVSDVAIMNDHPETP |
Parental | PPLASLNVSKLASKARTEKEEKLSQAYA-ISAGVSLEGQQLFQTIH-KTIKDCKWQEKNIVVMEEVVITP |
.PLASL.VSKLASKART.K.EKLSQAY..IS.GVSLEGQQLFQ.I..KTIKDCKWQEK.I.VMEE.VITP | |
Retrocopy | APLASLSVSKLASKART-KKEKLSQAYE<ISSGVSLEGQQLFQIIR>KTIKDCKWQEKSIIVMEEAVITP |
Parental | PYQV-ENCKGKEG-SALSHVRKIVEKHFRDV |
........K.K.G...LSHV.K.VEKHFRDV | |
Retrocopy | ISSI<KSVKAKRG<CTLSHVHKTVEKHFRDV |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Canis familiaris | ENSCAFG00000014379 | 2 retrocopies | |
Choloepus hoffmanni | ENSCHOG00000001198 | 1 retrocopy | |
Dipodomys ordii | ENSDORG00000016381 | 1 retrocopy | |
Erinaceus europaeus | ENSEEUG00000002419 | 1 retrocopy | |
Echinops telfairi | ENSETEG00000008374 | 1 retrocopy | |
Felis catus | ENSFCAG00000029083 | 1 retrocopy | |
Homo sapiens | ENSG00000161654 | 1 retrocopy | |
Loxodonta africana | ENSLAFG00000005202 | 1 retrocopy | |
Macropus eugenii | ENSMEUG00000007501 | 1 retrocopy | |
Myotis lucifugus | ENSMLUG00000006391 | 1 retrocopy | |
Macaca mulatta | ENSMMUG00000006804 | 1 retrocopy | |
Mus musculus | ENSMUSG00000020922 | 1 retrocopy | |
Otolemur garnettii | ENSOGAG00000010489 | 2 retrocopies | |
Oryzias latipes | ENSORLG00000011310 | 1 retrocopy | |
Pteropus vampyrus | ENSPVAG00000013706 | 1 retrocopy | |
Rattus norvegicus | ENSRNOG00000020894 | 1 retrocopy | |
Tupaia belangeri | ENSTBEG00000012523 | 2 retrocopies |
retro_tbel_3062 , retro_tbel_60,
|
Vicugna pacos | ENSVPAG00000011145 | 1 retrocopy |