RetrogeneDB ID: | retro_fcat_1517 | ||
Retrocopylocation | Organism: | Cat (Felis catus) | |
Coordinates: | D3:38708827..38709129(+) | ||
Located in intron of: | ENSFCAG00000015368 | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | PPIA | ||
Ensembl ID: | ENSFCAG00000009159 | ||
Aliases: | PPIA, MT-ND1, MTND1, NADH1, ND1, cypA | ||
Description: | Peptidyl-prolyl cis-trans isomerase A [Source:UniProtKB/Swiss-Prot;Acc:Q8HXS3] |
Percent Identity: | 74.51 % |
Parental protein coverage: | 65.58 % |
Number of stop codons detected: | 1 |
Number of frameshifts detected | 1 |
Parental | VLQLFADKVPKTAENFRALSTGEKGFGYKGSCFHR-IIPGFMCQGGDFTRHNGTGGKSIYGEKFDDENFI |
V...F...VP...ENF.ALSTGEK..GYKGS.FHR.II.GFMCQ.G.F..HNGT..KS.YGEKFDDENFI | |
Retrocopy | VAMFFL*AVPNSTENFHALSTGEKRSGYKGSSFHR<IILGFMCQRGGFPCHNGTVSKSTYGEKFDDENFI |
Parental | LKHTGPGILSMANAGPNTNGSQFFICTAKTEW |
LKHTGPGILSMANAGP.T.GSQFFI.T.KTEW | |
Retrocopy | LKHTGPGILSMANAGPDTKGSQFFIRTMKTEW |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP017611_brain | 0 .00 RPM | 129 .35 RPM |
SRP017611_kidney | 0 .00 RPM | 193 .34 RPM |
SRP017611_liver | 0 .00 RPM | 71 .07 RPM |