Parental gene:

ENSMODG00000016089

Aliases:None
Description:Peptidyl-prolyl cis-trans isomerase [Source:UniProtKB/TrEMBL;Acc:F7FZ45]
Organism:Opossum (Monodelphis domestica)
Coordinates:1:502617572..502622660(+)


>ENSMODG00000016089
ATGGCCAACCCGAACGTGTACTTCGACATCTGCGTCGAAAACGAGCCCCTAGGCCGGGTTACTTTCGAGCTCTTTGCAGA
CAAAGTTCCAAAGACAGCAGAAAACTTCCGGGCTCTGAGCACTGGAGAGAAGGGATTTGGTTACAAGGGATCCTGCTTTC
ACAGAATCATTCCTGGGTTTATGTGCCAGGGTGGTGACTTCACTCGCCATAATGGCACTGGTGGCAAGTCCATCTATGGG
GAGAAATTTGCTGATGAGAACTTCATCCTGAAGCATACTGGCCCTGGCATCTTGTCCATGGCAAATGCTGGACCCAACAC
AAATGGCTCCCAGTTTTTCATCTGTACTGCTAAGACTGATTGGTTGGATGGCAAGCATGTGGTCTTTGGCCAAGTGAAAG
AAGGCATGAACATTGTGGAAGCTATGGAGCGTTTTGGTTCTCGGGATGGCAAGACCAGCAAGAAGATCACCATTGCTGAC
TGTGGACAAATCTAA

Library Parental gene expression (RPM)
SRP007412_brain 2046 .97 RPM
SRP007412_cerebellum 1443 .91 RPM
SRP007412_heart 301 .82 RPM
SRP007412_kidney 1241 .77 RPM
SRP007412_liver 1506 .44 RPM
SRP007412_testis 702 .45 RPM



Species Parental gene accession Homology type Retrogenes number
Ailuropoda melanoleuca ENSAMEG00000017784 possible_ortholog 30 retrogenes
Bos taurus ENSBTAG00000012003 possible_ortholog 12 retrogenes
Choloepus hoffmanni ENSCHOG00000011597 possible_ortholog 12 retrogenes
Callithrix jacchus ENSCJAG00000011969 possible_ortholog 54 retrogenes
Cavia porcellus ENSCPOG00000002632 possible_ortholog 11 retrogenes
Dipodomys ordii ENSDORG00000003705 possible_ortholog 12 retrogenes
Echinops telfairi ENSETEG00000002186 possible_ortholog 21 retrogenes
Felis catus ENSFCAG00000009159 possible_ortholog 18 retrogenes
Homo sapiens ENSG00000196262 possible_ortholog 78 retrogenes
Gorilla gorilla ENSGGOG00000026298 possible_ortholog 4 retrogenes
Gorilla gorilla ENSGGOG00000027442 possible_ortholog 1 retrogene
Loxodonta africana ENSLAFG00000011345 possible_ortholog 1 retrogene
Macropus eugenii ENSMEUG00000002016 ortholog_one2many 20 retrogenes
Macaca mulatta ENSMMUG00000016638 possible_ortholog 10 retrogenes
Mustela putorius furo ENSMPUG00000018190 possible_ortholog 2 retrogenes
Mus musculus ENSMUSG00000071866 possible_ortholog 2 retrogenes
Oryctolagus cuniculus ENSOCUG00000016662 possible_ortholog 3 retrogenes
Otolemur garnettii ENSOGAG00000027997 possible_ortholog 31 retrogenes
Pongo abelii ENSPPYG00000017586 possible_ortholog 12 retrogenes
Pongo abelii ENSPPYG00000017587 possible_ortholog 4 retrogenes
Pan troglodytes ENSPTRG00000023064 possible_ortholog 77 retrogenes
Rattus norvegicus ENSRNOG00000006423 possible_ortholog 2 retrogenes
Sorex araneus ENSSARG00000007250 possible_ortholog 1 retrogene
Sarcophilus harrisii ENSSHAG00000017062 ortholog_one2many 3 retrogenes
Ictidomys tridecemlineatus ENSSTOG00000010215 possible_ortholog 10 retrogenes
Tupaia belangeri ENSTBEG00000017484 possible_ortholog 77 retrogenes
Tarsius syrichta ENSTSYG00000008973 possible_ortholog 23 retrogenes
Tursiops truncatus ENSTTRG00000002964 possible_ortholog 16 retrogenes

# RetrogeneDB ID Identity (%) Coverage (%) ORF conservation Expression evidence RDV
1. retro_mdom_29 84.42 93.90
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2. retro_mdom_85 82.61 98.17
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3. retro_mdom_215 96.95 100.00
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4. retro_mdom_272 83.21 83.54
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5. retro_mdom_730 89.01 55.49
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6. retro_mdom_1373 53.33 72.56
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7. retro_mdom_1524 72.93 79.88
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8. retro_mdom_1856 58.59 74.39
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9. retro_mdom_1884 53.57 100.00
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Download FASTA sequences of all ENSMODG00000016089 retrocopies